View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10548_low_2 (Length: 341)

Name: NF10548_low_2
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10548_low_2
NF10548_low_2
[»] chr5 (2 HSPs)
chr5 (285-331)||(37506549-37506595)
chr5 (44-121)||(37835063-37835140)
[»] chr7 (1 HSPs)
chr7 (44-121)||(12281060-12281137)


Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 37506549 - 37506595
Alignment:
Q  285 tttaagataactctatatattgtcattcttgacacattgcacctttg 331  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  37506549 tttaacataactctctatattgtcattcttgacacattgcacctttg 37506595  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 37835063 - 37835140
Alignment:
Q  44 caactttaacatgagatgtccattaaaaattgtacaatcaatgtcacatcgttatattaacaagatgagaattaaatg 121  Q
    |||||||||||||| ||||| |||||||| |||| || |||| |||||  ||||||  |||||||||| |||| ||||    
T  37835063 caactttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatg 37835140  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 12281060 - 12281137
Alignment:
Q  44 caactttaacatgagatgtccattaaaaattgtacaatcaatgtcacatcgttatattaacaagatgagaattaaatg 121  Q
    |||||||||||||| ||||| |||||||| |||| || |||| |||||  ||||||  |||||||||| |||||||||    
T  12281060 caactttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattaaatg 12281137  T

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