View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10548_low_4 (Length: 265)
Name: NF10548_low_4
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10548_low_4 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 106 - 265
Target Start/End: Original strand, 28008937 - 28009096
Alignment:
| Q |
106 |
gttaacatgggagcacttagcacatactttaactataattgttacccttatcaacctattcaaactactaccaacaactcagaaatcaccacttttcaac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
28008937 |
gttaacatgggagcacttagcacatacttcaattataattgttacccttatcaacctactcaaactaccaataacaactcagaaatcaccacttttcaac |
28009036 |
T |
|
| Q |
206 |
atgatgaacaagaacaaaaccactatttcaatgaagcttctcttttagatgaaagcttca |
265 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28009037 |
atcatgaacaagaacaaaaccactatttcaatgaagcttctcttttagatgaaagcttca |
28009096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 28008833 - 28008895
Alignment:
| Q |
11 |
ctacattaattaattcaa-----cattctcgtacttgtttgtctttaattaactaactaacca |
68 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28008833 |
ctacattaattaattcaaacaaacattctcgtacttgtttgtctttaattaactaactaacca |
28008895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 26427983 - 26427870
Alignment:
| Q |
106 |
gttaacatgggagcacttagcacatactttaactataattgttacccttatcaacctattcaaactactaccaacaactcagaaatcaccacttttcaac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
26427983 |
gttaacatgggagcacttagcacatacttcaactataattgttatccttatcaacctattcaaa---ctaccaacaactcagaaatcactacttttcaac |
26427887 |
T |
|
| Q |
206 |
atgatgaacaagaacaa |
222 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
26427886 |
atcatgaacaagaacaa |
26427870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 26427838 - 26427800
Alignment:
| Q |
227 |
actatttcaatgaagcttctcttttagatgaaagcttca |
265 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
26427838 |
actatttgaatgaaacttctcttttagatgaaagcttca |
26427800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University