View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10548_low_9 (Length: 203)
Name: NF10548_low_9
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10548_low_9 |
 | |
|
| [»] scaffold1030 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 35131507 - 35131686
Alignment:
| Q |
19 |
acctgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacatttgtgctaccctaaacaaatcttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35131507 |
acctgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacacttgtgctaccctaaacaaatcttg |
35131606 |
T |
|
| Q |
119 |
tggtgaaagacacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaaccttgcaatccctttgcttct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
35131607 |
tggtgaaagacacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaaccttgcaatccccttgattct |
35131686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 35138815 - 35138985
Alignment:
| Q |
19 |
acctgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacatttgtgctaccctaaacaaatcttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35138815 |
acctgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacacttgtgctaccctaaacaaatcttg |
35138914 |
T |
|
| Q |
119 |
tggtgaaagacacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaaccttgcaatccc |
189 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35138915 |
tggtgaaagaaacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaaccttgcaatccc |
35138985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 14278556 - 14278735
Alignment:
| Q |
19 |
acctgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacatttgtgctaccctaaacaaatcttg |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||| | |||||| ||| | || |||| |||||||||| |
|
|
| T |
14278556 |
acctgctccatttttgttcgacatgtttctcccacaaacaatcgcctctactaatattcctcaaacgactacacacttgcgatatcctatacaaatcttg |
14278655 |
T |
|
| Q |
119 |
tggtgaaagacacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaaccttgcaatccctttgcttct |
198 |
Q |
| |
|
||||||||||| ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
14278656 |
tggtgaaagacgcttaagtatgcaatgtacaatttcatcaggtaaatctaaaagagaaaccttgcaatccccttgattct |
14278735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 14284037 - 14284215
Alignment:
| Q |
22 |
tgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacatttgtgctaccctaaacaaatcttgtgg |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||| ||| |||||||| || |||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14284037 |
tgctccacttttgttcgacatgtttctcccataaataatcgcttctactcatgttcctcaaattagtacacacttgtgctatcctaaacaaatcttgtga |
14284136 |
T |
|
| Q |
122 |
tgaaagacacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaaccttgcaatccctttgcttctcc |
200 |
Q |
| |
|
||||||| ||| | |||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
14284137 |
tgaaagatgcttaatgatgcaatgtacaacttcatcagataaatctaaaagagaaaccttgcaatccccttgattctcc |
14284215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 14258716 - 14258753
Alignment:
| Q |
19 |
acctgctccatttttgttccacatgtttctcccacaaa |
56 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
14258716 |
acctgctccatttttgttcgacatgtttctctcacaaa |
14258753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 2934 - 2774
Alignment:
| Q |
19 |
acctgctccatttttgttccacatgtttctcccacaaatgatcccttctactaatattcctcaaatgggtacacatttgtgctaccctaaacaaatcttg |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||||||||||| | |||||| ||| | || ||||| ||||||||| |
|
|
| T |
2934 |
acctgctccatttttgttcgacatgtttctcccacatacaatcgcctctactaatattcctcaaacgactacacacttgcgataacctaatcaaatcttg |
2835 |
T |
|
| Q |
119 |
tggtgaaagacacttgaggatgcaatccacaagttcatcaggtaaatctaaaagagaaacc |
179 |
Q |
| |
|
||||||||||| || || ||| |||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
2834 |
tggtgaaagacgtttaagtatgtaatctacaatttcaccaggtaaatctaaaagagaaacc |
2774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University