View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10549_2 (Length: 315)
Name: NF10549_2
Description: NF10549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10549_2 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 16327212 - 16326915
Alignment:
| Q |
21 |
gaagaaaattacggaattcgatttaatttgtttccttttccaattgcatttttcatgaaaatttgatttaattagttccaatgtaatttcatcnnnnnnn |
120 |
Q |
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| T |
16327212 |
gaagaaaattacggaattcgatttaatttgtttccttttccaattgcatttttcatgaaaatttgatttaattagttccaatgtaatttcatcaaaaaaa |
16327113 |
T |
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| Q |
121 |
---ttagttccaatgtaattatgacacttcgtttgccttttgactgaatactcaattcattttcaacttcctttgccttttgactgatatttttactaaa |
217 |
Q |
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| T |
16327112 |
aaattagttccaatgtaattatgacacttcgtttgccttttgactgaatactcaattcattttcaacttcctttgccttttgactgatatttttactaaa |
16327013 |
T |
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| Q |
218 |
atgctcaattcattttccgcagtcgtgtatggttagttgatttgggatcgaaatcagattcaaccaaaccnnnnnnngtgaaacaaaaatataataaa |
315 |
Q |
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| T |
16327012 |
atgctcaattcattttccgcagtcgtgtatggttagttgatttgggatcgaaatcagattcaaccaaacctttttttgtgaaacaaaaatataataaa |
16326915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 16108818 - 16108896
Alignment:
| Q |
162 |
tgaatactcaattcattttcaacttcctttgccttttgactgatatttttactaaaatgctcaattcattttccgcagtc |
241 |
Q |
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| T |
16108818 |
tgaatactcaattcattttcaacttcctttgccttttgactgata-ttttacttaaatgctcaattcattttccgcagtc |
16108896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 16326798 - 16326725
Alignment:
| Q |
162 |
tgaatactcaattcattttcaacttcctttgccttttgactgatatttttactaaaatgctcaattcattttccg |
236 |
Q |
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| T |
16326798 |
tgaatactcaattcattttcaacttcctttgccttttgactgata-ttttacttaaatgctcaattcattttccg |
16326725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 16108714 - 16108798
Alignment:
| Q |
21 |
gaagaaaattacggaattcgatttaatttgtttccttttccaattgcatttttcatgaaaatttgatttaattagttccaatgtaa |
106 |
Q |
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| T |
16108714 |
gaagaaaatcacggaatttgatttaatttgtttcctttttcaattgca-ttttcatgaacatttgatttaattaattccactgtaa |
16108798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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