View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10550_1 (Length: 714)

Name: NF10550_1
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10550_1
NF10550_1
[»] chr4 (9 HSPs)
chr4 (28-701)||(26646911-26647595)
chr4 (404-686)||(13682538-13682805)
chr4 (404-658)||(13669681-13669920)
chr4 (526-686)||(13689216-13689373)
chr4 (581-686)||(22188262-22188367)
chr4 (330-376)||(13669607-13669653)
chr4 (330-376)||(13682464-13682510)
chr4 (526-604)||(13687264-13687342)
chr4 (430-474)||(13687186-13687230)
[»] chr8 (4 HSPs)
chr8 (205-658)||(37001797-37002241)
chr8 (233-658)||(36992080-36992500)
chr8 (73-206)||(37002274-37002409)
chr8 (72-103)||(36992498-36992529)
[»] chr7 (2 HSPs)
chr7 (303-376)||(8596984-8597057)
chr7 (401-455)||(8596901-8596959)
[»] chr3 (2 HSPs)
chr3 (98-203)||(27442791-27442895)
chr3 (98-203)||(27445947-27446051)
[»] chr1 (1 HSPs)
chr1 (106-203)||(12796262-12796358)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 28 - 701
Target Start/End: Complemental strand, 26647595 - 26646911
Alignment:
Q  28 acatggaagagtaaaacataagggaatttatcagtatattgtttgagtgcacaagaggtgtctttaatatccttacggagagatgaaaaccactaaataa 127  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  26647595 acatggaagagtaaaacataagggaatttatcagtat--tgtttgagtgcacaagagttgtctttaatatctttacggagagatgaaaaccactaaataa 26647498  T
Q  128 aatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaat---------------------aat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||    
T  26647497 aatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaataattaattacaggataggaacaat 26647398  T
Q  207 atagctaagtaaatcagtttcaacagtacagatgttgtacaaacgttgtaggagtctaagtttgtatttgatgcttttgtagaagtctatgttgtacaaa 306  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  26647397 atagctaagtaaatca-tttcaacagtacaaatgttgtaccaacgttgcaggagtctaagtttgtattttatgcttttgtaggagtctatgttgtacaaa 26647299  T
Q  307 tgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatattttgttattc--nnnnnnnnnnnnncgggcgtcacgctcc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||               |||||||||| ||||    
T  26647298 tgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatgttttgttattcaacaaaaaaaaaaaacgggcgtcacactcc 26647199  T
Q  405 ctcaagttttttgtttgctaattaactaacatgatttttcaatatttgcagattttgtactttcatgaaagaaatgaaagaaagtggcacaagttcaatg 504  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||| |||||||| |    
T  26647198 ctcaagttttttgtctgctaattaactaacatgatttttcaatatttgcagattttgtactttc---------atgaaagaaagtggcaaaagttcaacg 26647108  T
Q  505 aacagaatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatat 604  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||    
T  26647107 aacataatgattcgggaaaaggaagatgtaattaaggaagccttggtgcatgaattttttatagatggtgttgtgacatctcctttgctaatggagatat 26647008  T
Q  605 tatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggtgcttgatgatgatgt 701  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||| |||||||||||| |||||||||||||    
T  26647007 tatgcgatggttatgaatcaataaaggctaacaatactacggataagtttgtcataattgagaaagattgttttgagttggtggttgatgatgatgt 26646911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 404 - 686
Target Start/End: Original strand, 13682538 - 13682805
Alignment:
Q  404 cctcaagttttttgtttgctaattaactaacatgatttttcaatatttgcagattttgtactttcatgaaagaaatgaaagaaagtggcacaagttcaat 503  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||| |||         |||   |||    ||     
T  13682538 cctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagcttctgtgctttcatgaaaaaaa---------gtgat-caa----aag 13682623  T
Q  504 gaacagaatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagata 603  Q
    || || |||| |||||||| | ||||||||||||||||||||||||||| | ||          | |||||||||||||||||||||||||||||| |||    
T  13682624 gacca-aatgttttgggaagaagaagatgtaattaaggaagccttggtggagcacttttttgtggttggtgttgtgacatctcctttgctaatggacata 13682722  T
Q  604 ttatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggt 686  Q
    |||||| |||||| | |||||||| | ||||||||| |||||| ||||||||||| | |  ||||| || |||||||||||||    
T  13682723 ttatacaatggttgtaaatcaatagatgctaacaatgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggt 13682805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 658
Target Start/End: Original strand, 13669681 - 13669920
Alignment:
Q  404 cctcaagttttttgtttgctaattaactaacatgatttttcaatatttgcagattttgtactttcatgaaagaaatgaaagaaagtggcacaagttcaat 503  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||| |||         |||   |||    ||     
T  13669681 cctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagcttctgtgctttcatgaaaaaaa---------gtgat-caa----aag 13669766  T
Q  504 gaacagaatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagata 603  Q
    || || |||| |||||||| | ||||||||||||||||||||||||||| | ||          | |||||||||||||||||||||||||||||| |||    
T  13669767 gacca-aatgttttgggaagaagaagatgtaattaaggaagccttggtggagcacttttttgtggttggtgttgtgacatctcctttgctaatggacata 13669865  T
Q  604 ttatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtca 658  Q
    |||||| |||||| | |||||||| | ||||||||| |||||| |||||||||||    
T  13669866 ttatacaatggttgtaaatcaatagatgctaacaatgctacggctaagtttgtca 13669920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 526 - 686
Target Start/End: Original strand, 13689216 - 13689373
Alignment:
Q  526 gaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggttatgaatcaa 625  Q
    ||||||||||||||||||||||||||| | ||         ||||||||||||||||||||||||||||||||| |   ||||| |||||| | ||||||    
T  13689216 gaagatgtaattaaggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggaca---tatacaatggttgtaaatcaa 13689312  T
Q  626 taaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggt 686  Q
    || | ||||||||| |||||| ||||||||||| | |  ||||| || |||||||||||||    
T  13689313 tagatgctaacaatgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggt 13689373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 686
Target Start/End: Complemental strand, 22188367 - 22188262
Alignment:
Q  581 catctcctttgctaatggagatattatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttga 680  Q
    ||||||||||| ||||||| ||||||||| |||||||| |||||||||| |||||||||||||||  |||| |||| | | || ||||| || ||||||     
T  22188367 catctcctttgataatggacatattatacaatggttatcaatcaataaatgctaacaatactacgtctaaggttgttagaattgaggaaaataggtttgg 22188268  T
Q  681 gttggt 686  Q
    ||||||    
T  22188267 gttggt 22188262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 13669607 - 13669653
Alignment:
Q  330 tcttaatttatgagaaatgaaattttgaaacccatattttgttattc 376  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  13669607 tcttaatttatgagaaatgaaattttgaaacccatgttctgttattc 13669653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 13682464 - 13682510
Alignment:
Q  330 tcttaatttatgagaaatgaaattttgaaacccatattttgttattc 376  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  13682464 tcttaatttatgagaaatgaaattttgaaacccatgttctgttattc 13682510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 604
Target Start/End: Original strand, 13687264 - 13687342
Alignment:
Q  526 gaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatat 604  Q
    ||||||||||||||||||||||||||| | ||         ||||||||||||||||||||||||||||||||| ||||    
T  13687264 gaagatgtaattaaggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggacatat 13687342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 13687186 - 13687230
Alignment:
Q  430 ctaacatgatttttcaatatttgcagattttgtactttcatgaaa 474  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||    
T  13687186 ctaatatgatttttcaatatttgcagattctgtgctttcatgaaa 13687230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 205 - 658
Target Start/End: Complemental strand, 37002241 - 37001797
Alignment:
Q  205 atatagctaagtaaatcagtttcaacagtacagatgttgtacaaacgttgtaggagtctaagtttgtatttgatgcttttgtagaagtctatgttgtaca 304  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  37002241 atatagctaagtaaatcagtttcaacagtacaaatgttgtacaaacgttgcaggagtctaagtttgtatttgatgcttttgtaggagtctatgttgtata 37002142  T
Q  305 aatgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatattttgttattcnnnnnnnnnnnnncgggcgtcacgctcc 404  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||             ||| |||||| ||||    
T  37002141 aatgttgtgaatttaaatgttatactcttaatttatgagaaatgaaattttgaaacccatgttttgttattcaacaaaaaaaaaacggtcgtcacactcc 37002042  T
Q  405 ctcaagttttttgtttgctaattaactaacatgatttttcaatatttgcagattttgtactttcatgaaagaaatgaaagaaagtggcacaagttcaatg 504  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||   ||      |||||||||||  || ||||| |    
T  37002041 ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcat---ag------aagaaagtggccaaatttcaaag 37001951  T
Q  505 aacagaatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatat 604  Q
     ||  |||| ||||||||||  |||||||||||| ||||||||||||| | ||         |||||||| |||||||||||||||||||||||||||||    
T  37001950 gaccaaatgttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatat 37001851  T
Q  605 tatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtca 658  Q
    ||||| |||||||| |||||||||| ||| |||||||||||| |||||||||||    
T  37001850 tatacaatggttatcaatcaataaatgctgacaatactacggctaagtttgtca 37001797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 233 - 658
Target Start/End: Complemental strand, 36992500 - 36992080
Alignment:
Q  233 tacagatgttgtacaaacgttgtaggagtctaagtttgtatttgatgcttttgtagaagtctatgttgtacaaatgttgtgaatttaaatgtgatattct 332  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  36992500 tacaaatgttgtacaaacgttgcaggagtctaagtttgtatttgatgcttttgtaggagtctatgttgtacaaatgttgtgaatttaaatgtgatactct 36992401  T
Q  333 taatttatgagaaatgaaattttgaaacccatattttgttatt------cnnnnnnnnnnnnncgggcgtcacgctccctcaagttttttgtttgctaat 426  Q
    |||||||||||||||||||||||||||||||| ||||||||||                    |||||||||| ||  |||||  |||||||||||||||    
T  36992400 taatttatgagaaatgaaattttgaaacccatgttttgttattaaaaaaaaaaaaaaaaaaatcgggcgtcacact--ctcaaactttttgtttgctaat 36992303  T
Q  427 taactaacatgatttttcaatatttgcagattttgtactttcatgaaagaaatgaaagaaagtggcacaagttcaatgaacagaatgatttgggaaaagg 526  Q
    ||||||| |||||||||||||||||||||||| |||||||||||   ||      ||||||||| |  || ||||| | ||  |||| ||||||||||      
T  36992302 taactaatatgatttttcaatatttgcagattctgtactttcat---ag------aagaaagtgaccaaatttcaaaggaccaaatgttttgggaaaaac 36992212  T
Q  527 aagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggttatgaatcaat 626  Q
    |||||||||||| ||||||||||||| | ||         |||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  36992211 aagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatggttatcaatcaat 36992112  T
Q  627 aaaggctaacaatactacggataagtttgtca 658  Q
    ||| ||| |||||||||||| |||||||||||    
T  36992111 aaatgctgacaatactacggctaagtttgtca 36992080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 37002409 - 37002274
Alignment:
Q  73 agtgcacaagaggtgtctttaatat--ccttacggagagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagt 170  Q
    |||||| |||||||| |||||||||  ||||||| |||||||||||| |||||||||||||||| || | ||| ||| |||||||||||||  |||||||    
T  37002409 agtgcaaaagaggtggctttaatatagccttacgaagagatgaaaacaactaaataaaatgactacactaacttaaatgtgaattgtggaaacactaagt 37002310  T
Q  171 caattccactggcacttccttagaaataggaataat 206  Q
    |||||||| | ||||| ||| | |||||||||||||    
T  37002309 caattccattagcactccctaacaaataggaataat 37002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 103
Target Start/End: Complemental strand, 36992529 - 36992498
Alignment:
Q  72 gagtgcacaagaggtgtctttaatatccttac 103  Q
    ||||||||||||||||||||||||||||||||    
T  36992529 gagtgcacaagaggtgtctttaatatccttac 36992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 8597057 - 8596984
Alignment:
Q  303 caaatgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatattttgttattc 376  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  8597057 caaatgttgtgaatttaaatgtgatactcttaatttatgagaaatgaaattttggaacccatgttttgttattc 8596984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 8596959 - 8596901
Alignment:
Q  401 ctccctcaagttttttgtttgctaattaactaac----atgatttttcaatatttgcag 455  Q
    |||||| || |||||||||||||||||||||||     |||||||||||||||||||||    
T  8596959 ctccctaaaattttttgtttgctaattaactaattaatatgatttttcaatatttgcag 8596901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 27442895 - 27442791
Alignment:
Q  98 ccttacggagagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaat 197  Q
    |||||| || |||| ||| | |||||| |||||||||||| | |||||| ||||||| ||||||  ||||||||||| |||||  | |||||| | ||||    
T  27442895 ccttacagatagataaaaccaactaaacaaaatgactccactaactaaa-cgtgaatagtggaacaactaagtcaatcccactatcccttcctaacaaat 27442797  T
Q  198 aggaat 203  Q
    ||||||    
T  27442796 aggaat 27442791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 27446051 - 27445947
Alignment:
Q  98 ccttacggagagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaat 197  Q
    |||||| || |||| ||| | |||||| |||||||||||| | |||||| ||||||| ||||||  ||||||||||| |||||  | |||||| | ||||    
T  27446051 ccttacagatagataaaaccaactaaacaaaatgactccactaactaaa-cgtgaatagtggaacaactaagtcaatcccactatcccttcctaacaaat 27445953  T
Q  198 aggaat 203  Q
    ||||||    
T  27445952 aggaat 27445947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 12796358 - 12796262
Alignment:
Q  106 agagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaat 203  Q
    |||||| ||| | |||||| |||||||||||| | |||||| ||||||| ||||||  ||||||||||| |||||  | |||||| | ||||||||||    
T  12796358 agagataaaaccaactaaacaaaatgactccactaactaaa-cgtgaatagtggaacaactaagtcaatcccactatcccttcctaacaaataggaat 12796262  T

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