View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10550_2 (Length: 396)
Name: NF10550_2
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10550_2 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 28 - 352
Target Start/End: Original strand, 29412915 - 29413239
Alignment:
| Q |
28 |
agcagctgcataagttgatgctgtgagagatacaacctcccagtcattaccgcgagaagacttgtccccttcatcttcagttcctgccatcttttgtctt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29412915 |
agcagctgcataagttgatgctgtgagagatacaacctcccagtcattactgcgagaagacttttccccttcatcttcagttcctgccatcttttgtctt |
29413014 |
T |
|
| Q |
128 |
catcaaaaagttgatatcagagttctaatttaactacaaaaccaaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggta |
227 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
29413015 |
catcaaaaagttgatatcagagttctaattttactacaaaaccaaaaagtgaaaaacaaacgcacgtagcaaaaacaattatgcaggcaggggagaggta |
29413114 |
T |
|
| Q |
228 |
gggcagctaggttgaccaaaaaagatgtctgatttcatcacaacaatgcatacatctacaagaaaactactacttttgggaagaaaggaaaaaactaaaa |
327 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29413115 |
gggcagttaggttgaccaaaaaaggtgtctgatttcatcacaacaatgcatacatctacaagaaaactactacttttgggaagaaagaaaaaaactaaaa |
29413214 |
T |
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| Q |
328 |
gtttcacagttcacaggcatgtgca |
352 |
Q |
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||||||||||||||||||||||||| |
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| T |
29413215 |
gtttcacagttcacaggcatgtgca |
29413239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 31 - 339
Target Start/End: Complemental strand, 10161261 - 10160947
Alignment:
| Q |
31 |
agctgcataagttgatgctgtgagagatacaacctcccagtcattaccgcgagaagacttgtccccttcatcttcagttcctgccatcttttgtcttcat |
130 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10161261 |
agctgcataagttgatgttgtgagagatacaacctcccagtcattaccgcgagaagacttgtccccttcattttcagttcctgccatcttttgtcttcat |
10161162 |
T |
|
| Q |
131 |
caaaaagttgatatcagagttctaatttaactacaaaaccaaaa------agtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagag |
224 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161161 |
caaaaagttgctatcagagttctaattttactacaaaaccaaaaccaaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagag |
10161062 |
T |
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| Q |
225 |
gtagggcagctaggttgaccaaaaaagatgtctgatttcatcacaacaatgcatacatctacaagaaaactactacttttgggaagaaaggaaaaaacta |
324 |
Q |
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||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
10161061 |
gtagggcagttaggttgatcaaaaaaggtgttcgatttcatcacaacaatgcatacatctacgagaaaactactacttttgggaagaaagaaaaaaacta |
10160962 |
T |
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| Q |
325 |
aaagtttcacagttc |
339 |
Q |
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||||||||||||||| |
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| T |
10160961 |
aaagtttcacagttc |
10160947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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