View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10550_4 (Length: 326)

Name: NF10550_4
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10550_4
NF10550_4
[»] chr7 (14 HSPs)
chr7 (67-226)||(17272705-17272864)
chr7 (90-221)||(29681776-29681906)
chr7 (153-226)||(7211866-7211939)
chr7 (123-216)||(7211947-7212040)
chr7 (65-205)||(43500011-43500148)
chr7 (152-215)||(25099327-25099390)
chr7 (150-226)||(46282874-46282951)
chr7 (178-226)||(32315713-32315761)
chr7 (165-215)||(32315790-32315840)
chr7 (153-226)||(4911698-4911771)
chr7 (165-205)||(6980948-6980988)
chr7 (165-205)||(42494799-42494839)
chr7 (175-229)||(29407496-29407550)
chr7 (196-233)||(29681903-29681940)
[»] chr3 (23 HSPs)
chr3 (65-226)||(11512393-11512554)
chr3 (65-226)||(22893891-22894051)
chr3 (99-216)||(31342023-31342140)
chr3 (99-200)||(20286936-20287037)
chr3 (152-214)||(36738279-36738341)
chr3 (168-208)||(17546997-17547037)
chr3 (178-234)||(48342785-48342841)
chr3 (175-226)||(29081700-29081751)
chr3 (74-130)||(29081598-29081655)
chr3 (175-232)||(32385358-32385415)
chr3 (152-205)||(32385436-32385489)
chr3 (178-214)||(48342320-48342356)
chr3 (163-206)||(29081625-29081668)
chr3 (164-194)||(16205747-16205777)
chr3 (151-213)||(20496553-20496614)
chr3 (196-234)||(22893890-22893928)
chr3 (175-233)||(31342108-31342165)
chr3 (64-109)||(25790897-25790942)
chr3 (72-109)||(49159502-49159539)
chr3 (197-229)||(5633181-5633213)
chr3 (69-101)||(5633181-5633213)
chr3 (196-236)||(11512517-11512557)
chr3 (175-235)||(36738362-36738422)
[»] chr1 (25 HSPs)
chr1 (64-227)||(50754729-50754892)
chr1 (65-226)||(28739304-28739465)
chr1 (65-208)||(9379842-9379985)
chr1 (65-226)||(28045325-28045486)
chr1 (65-208)||(9884865-9885008)
chr1 (108-208)||(6539593-6539693)
chr1 (98-200)||(15928097-15928200)
chr1 (65-137)||(44381908-44381981)
chr1 (175-234)||(10449446-10449505)
chr1 (65-132)||(35251165-35251234)
chr1 (69-132)||(49200058-49200122)
chr1 (65-205)||(10449447-10449579)
chr1 (175-219)||(28810061-28810105)
chr1 (178-233)||(44801751-44801806)
chr1 (175-233)||(44938794-44938852)
chr1 (171-208)||(4579192-4579229)
chr1 (196-234)||(28045449-28045487)
chr1 (196-234)||(28739303-28739341)
chr1 (196-234)||(44381907-44381945)
chr1 (152-194)||(44938872-44938914)
chr1 (163-200)||(719023-719060)
chr1 (72-109)||(6539683-6539720)
chr1 (150-191)||(49199994-49200035)
chr1 (196-233)||(50754854-50754891)
chr1 (181-233)||(593824-593876)
[»] chr2 (13 HSPs)
chr2 (65-208)||(39819087-39819230)
chr2 (65-208)||(12918557-12918700)
chr2 (65-224)||(15562212-15562371)
chr2 (99-226)||(7755342-7755469)
chr2 (234-296)||(8921495-8921557)
chr2 (77-226)||(13421692-13421841)
chr2 (152-232)||(34563326-34563406)
chr2 (21-61)||(8921552-8921592)
chr2 (165-205)||(18182591-18182631)
chr2 (72-123)||(39819060-39819112)
chr2 (65-109)||(12918498-12918543)
chr2 (196-233)||(12918663-12918700)
chr2 (196-233)||(39819193-39819230)
[»] chr6 (12 HSPs)
chr6 (65-226)||(2543735-2543895)
chr6 (65-226)||(11448063-11448224)
chr6 (153-233)||(369498-369578)
chr6 (175-233)||(16193830-16193888)
chr6 (65-205)||(16193757-16193888)
chr6 (176-233)||(28581731-28581788)
chr6 (165-221)||(2980786-2980842)
chr6 (155-216)||(35049754-35049816)
chr6 (196-233)||(11448187-11448224)
chr6 (196-234)||(2543734-2543772)
chr6 (152-205)||(28581810-28581863)
chr6 (150-206)||(1879187-1879243)
[»] chr4 (22 HSPs)
chr4 (65-208)||(31846782-31846925)
chr4 (99-206)||(6607420-6607527)
chr4 (65-207)||(31012152-31012294)
chr4 (81-206)||(6608375-6608500)
chr4 (66-142)||(2254622-2254698)
chr4 (156-216)||(54223569-54223629)
chr4 (152-226)||(11392307-11392379)
chr4 (72-138)||(46321429-46321496)
chr4 (175-233)||(36273058-36273116)
chr4 (166-216)||(38324924-38324974)
chr4 (155-216)||(41306689-41306750)
chr4 (151-208)||(43063542-43063599)
chr4 (175-223)||(30023646-30023694)
chr4 (67-132)||(32008336-32008402)
chr4 (175-229)||(33380606-33380660)
chr4 (179-229)||(53261093-53261143)
chr4 (165-206)||(9712943-9712984)
chr4 (165-205)||(22435379-22435419)
chr4 (67-121)||(15031965-15032020)
chr4 (72-123)||(31846900-31846952)
chr4 (178-226)||(40789263-40789311)
chr4 (72-123)||(54613030-54613082)
[»] chr5 (20 HSPs)
chr5 (65-226)||(5215560-5215722)
chr5 (92-226)||(9177863-9177997)
chr5 (92-208)||(29385303-29385419)
chr5 (81-208)||(19417469-19417595)
chr5 (64-200)||(36568736-36568872)
chr5 (150-200)||(1840003-1840053)
chr5 (152-224)||(23219360-23219432)
chr5 (151-233)||(896268-896350)
chr5 (93-216)||(25879328-25879447)
chr5 (163-216)||(42772054-42772107)
chr5 (150-213)||(31848177-31848239)
chr5 (71-131)||(7137637-7137698)
chr5 (152-208)||(7137665-7137721)
chr5 (189-233)||(41287997-41288041)
chr5 (179-234)||(12605660-12605715)
chr5 (72-123)||(29385394-29385446)
chr5 (164-203)||(5998620-5998659)
chr5 (170-200)||(37325634-37325664)
chr5 (64-102)||(41288004-41288042)
chr5 (72-109)||(19417442-19417479)
[»] chr8 (11 HSPs)
chr8 (65-206)||(43465112-43465256)
chr8 (64-205)||(31470771-31470914)
chr8 (65-137)||(16687512-16687585)
chr8 (65-109)||(1605038-1605082)
chr8 (176-233)||(4531845-4531902)
chr8 (101-205)||(7931550-7931655)
chr8 (196-234)||(16687511-16687549)
chr8 (155-205)||(33763539-33763589)
chr8 (175-208)||(31470845-31470878)
chr8 (179-216)||(45051343-45051380)
chr8 (185-229)||(33763461-33763505)
[»] scaffold0343 (2 HSPs)
scaffold0343 (64-109)||(12225-12270)
scaffold0343 (152-205)||(12285-12338)
[»] scaffold1315 (1 HSPs)
scaffold1315 (175-226)||(1819-1870)
[»] scaffold1293 (1 HSPs)
scaffold1293 (175-226)||(201-252)
[»] scaffold0001 (1 HSPs)
scaffold0001 (150-208)||(507740-507798)
[»] scaffold0110 (1 HSPs)
scaffold0110 (175-232)||(26500-26557)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 17272864 - 17272705
Alignment:
Q  67 ataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaag 166  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  17272864 ataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaag 17272765  T
Q  167 aagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  17272764 aagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 17272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 29681906 - 29681776
Alignment:
Q  90 ttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgt 189  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||       |||||| ||| ||||| || |||||||| |||||| ||||    
T  29681906 ttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaatatcttgt-aaaaaaaaaaaaaaaagccacatgtgacgttgt 29681808  T
Q  190 ggttggccaatatcaccaaccacaatgccacc 221  Q
    ||||||||||| ||||||||||||||| ||||    
T  29681807 ggttggccaatgtcaccaaccacaatgtcacc 29681776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 7211939 - 7211866
Alignment:
Q  153 tgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  7211939 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 7211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 7211947 - 7212040
Alignment:
Q  123 ttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    ||||||||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||||||||||| || || |||||||||    
T  7211947 ttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttggccaatgtctcccaccacaatg 7212040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 43500148 - 43500011
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||  || |||||||||         |||||||||||||    
T  43500148 ggataatatttgggcgatattgtggttggtgatattggtgacattaccaaccacaatgttacaa-agtacaaaacaacaaaaaaa--ttgtgaaagaaaa 43500052  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||| | ||  |||||||||||| ||| ||||||||||    
T  43500051 agaagaatgtcatatgtgacattgtgattgaccaatatcac 43500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 25099327 - 25099390
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaat 215  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||    
T  25099327 ttgtgaaagaaaaagaagaaagacacttgtgacattgtggttgaccaaagtcaccaaccacaat 25099390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 46282951 - 46282874
Alignment:
Q  150 tcttgtgaaagaaaaagaagaaag-ccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||||||||| |||||||| |||||| ||| |||||    
T  46282951 tcttgtgaaagagaaagaagaaaaaccacttgtgatattgtggttggccaatgtcaccaactacaatgtcactcaagt 46282874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 32315761 - 32315713
Alignment:
Q  178 ttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  32315761 ttgtgacattgtggttggccaatgtcaccaaccacaatgtcacgcaagt 32315713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 32315790 - 32315840
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaat 215  Q
    ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  32315790 agaagaaagccacttctgacattgtagttgaccaatgtcaccaaccacaat 32315840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 4911698 - 4911771
Alignment:
Q  153 tgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||| ||||||||||  ||| ||||||||| | |||| ||||||||||| | ||||||| |||||||||    
T  4911698 tgtgaaagagaaagaagaaattcacctgtgacattatagttgaccaatatcaccgatcacaatgtcacccaagt 4911771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 6980948 - 6980988
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  6980948 agaagaaagccacttgtaacattgtggttggccaatgtcac 6980988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 42494839 - 42494799
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  42494839 agaagaaagccacttgtgacattgtggtttgccaatgtcac 42494799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 29407550 - 29407496
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtatt 229  Q
    ||||| ||||||||| |||||||||||||||| || |||||  ||||||||||||    
T  29407550 cacttatgacattgtagttggccaatatcaccgacgacaatatcacccaagtatt 29407496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 29681903 - 29681940
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29681903 ccaatgtcaccaaccacaatgtcacccaagtattatcc 29681940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 11512554 - 11512393
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||    
T  11512554 ggataatacttgggtgacattatggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacatcaaaaaaatcttgtgaaagaaaa 11512455  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  11512454 agaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 11512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 22893891 - 22894051
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||       |||||| ||||||||    
T  22893891 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaac-aaaaaatcttgttaaagaaaa 22893989  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  22893990 agaagaaagtcacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagt 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 31342140 - 31342023
Alignment:
Q  99 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  31342140 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagctacatgtgacattgtggttggcca 31342041  T
Q  199 atatcaccaaccacaatg 216  Q
    || |||||||||||||||    
T  31342040 atgtcaccaaccacaatg 31342023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 20287037 - 20286936
Alignment:
Q  99 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20287037 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaagtcttgtaaaagaaaaagaagaaagccacatgtgacattgtggttggcca 20286938  T
Q  199 at 200  Q
    ||    
T  20286937 at 20286936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 36738341 - 36738279
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaa 214  Q
    |||||||| | ||||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  36738341 ttgtgaaaaagaaagaagaaagacacttgtgatattgtggttgaccaatatcaccaaccacaa 36738279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 17547037 - 17546997
Alignment:
Q  168 agaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17547037 agaaagccacttgtgacattatggttggccaatatcaccaa 17546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 48342841 - 48342785
Alignment:
Q  178 ttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||||||||||||||| ||||| || ||||||| |||| |||||||||||||||||    
T  48342841 ttgtgacattgtggttgaccaatgtcgccaaccataatgtcacccaagtattatccc 48342785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 29081700 - 29081751
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    |||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  29081700 cacttgtgacattgtggttgaccaatgtcaccaaccacaatatcacccaagt 29081751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 29081598 - 29081655
Alignment:
Q  74 ttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagt 130  Q
    |||||||||||||| |||||||| || ||||||||| |||||||||||||| ||||||    
T  29081598 ttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagt 29081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 32385415 - 32385358
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatc 232  Q
    ||||||| |||||||||||| ||||| ||||||| ||||||| ||||||| |||||||    
T  32385415 cacttgtcacattgtggttgaccaatgtcaccaatcacaatgtcacccaaatattatc 32385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 32385436 - 32385489
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    |||||||||| ||||||||||  ||||| | |||||||||||||||||||||||    
T  32385436 ttgtgaaagagaaagaagaaaaacacttttaacattgtggttggccaatatcac 32385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 48342320 - 48342356
Alignment:
Q  178 ttgtgacattgtggttggccaatatcaccaaccacaa 214  Q
    ||||||||||||||||||||||||||||| |||||||    
T  48342320 ttgtgacattgtggttggccaatatcaccgaccacaa 48342356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 29081668 - 29081625
Alignment:
Q  163 aaagaagaaagccacttgtgacattgtggttggccaatatcacc 206  Q
    |||||||||||| |||||||||||||||||||| |||| |||||    
T  29081668 aaagaagaaagctacttgtgacattgtggttggtcaatgtcacc 29081625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 16205777 - 16205747
Alignment:
Q  164 aagaagaaagccacttgtgacattgtggttg 194  Q
    |||||||||||||||||||||||||||||||    
T  16205777 aagaagaaagccacttgtgacattgtggttg 16205747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 20496553 - 20496614
Alignment:
Q  151 cttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccaca 213  Q
    ||||||||||| | ||||||||| ||| ||||||||||||||| | |||| ||||||||||||    
T  20496553 cttgtgaaagagagagaagaaagtcacgtgtgacattgtggtt-gacaatgtcaccaaccaca 20496614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 22893928 - 22893890
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  22893928 ccaatgtcaccaaccacaatgtcacccaagtattatccc 22893890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 31342108 - 31342165
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||||| |||||||||||||  ||| ||||||||||||||| ||||||| ||||||||    
T  31342108 cacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaaatattatcc 31342165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 25790942 - 25790897
Alignment:
Q  64 tggataatacttgggtgacattgtcgttggtgatattggtgacatt 109  Q
    ||||||||| |||||||||||| | |||||||| ||||||||||||    
T  25790942 tggataatatttgggtgacattatggttggtgacattggtgacatt 25790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 49159539 - 49159502
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt 109  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  49159539 acttgggtgacattgtggttggtgacattggtgacatt 49159502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  197 caatatcaccaaccacaatgccacccaagtatt 229  Q
    |||||||||||||||||||| ||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  69 aatacttgggtgacattgtcgttggtgatattg 101  Q
    ||||||||||||||||||| |||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 11512517 - 11512557
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatcccct 236  Q
    ||||| |||||||||| |||| |||||||||||||||||||    
T  11512517 ccaatgtcaccaaccataatgtcacccaagtattatcccct 11512557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 36738362 - 36738422
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcccc 235  Q
    ||||| ||| ||||| |||| ||||| ||||||||||||||| ||||||| |||| |||||    
T  36738362 cacttatgatattgtagttgaccaatgtcaccaaccacaatgtcacccaaatattttcccc 36738422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 50754892 - 50754729
Alignment:
Q  64 tggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaa 163  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||       |||||| |||||||    
T  50754892 tggataatacttgggtgacattgtggttggtgacattggtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtaaaagaaa 50754793  T
Q  164 aagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagta 227  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  50754792 aagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcaccaaagta 50754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 28739304 - 28739465
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||| ||||||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaataacaaaaaaatcttgtaaaagaaaa 28739403  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  28739404 agaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 28739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 9379985 - 9379842
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    |||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  9379985 ggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 9379886  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  9379885 agaagaaagccacatgtgacattgtggttggccaatatcaccaa 9379842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 28045486 - 28045325
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaac-aacnnnnnnntcttgtgaaagaaa 163  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||        |||||| |||||||    
T  28045486 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaaaaaagaaaatcttgttaaagaaa 28045387  T
Q  164 aagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  28045386 aagaagaaagccacttgtgacattatggttggccaat-tcaccaaccacaatgtcacccaagt 28045325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 9885008 - 9884865
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    |||| |||||||||||| ||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||    
T  9885008 ggatgatacttgggtgatattgtggttggtgacattcgtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 9884909  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    ||||||||||||| |||||||||||||||| ||||| |||||||    
T  9884908 agaagaaagccacatgtgacattgtggttgaccaatgtcaccaa 9884865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 6539593 - 6539693
Alignment:
Q  108 ttaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcacca 207  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||    
T  6539593 ttaccaaccacaatgttacaagtgtgcaaaacaacaaaaaagtcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttgaccaatgtcacca 6539692  T
Q  208 a 208  Q
    |    
T  6539693 a 6539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 15928097 - 15928200
Alignment:
Q  98 attggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnn-tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggc 196  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||| ||||||||||||||||||    
T  15928097 attggtgacattatcaaccacaatgttacaagtgtacaaaacaacaacaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggc 15928196  T
Q  197 caat 200  Q
    ||||    
T  15928197 caat 15928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 44381908 - 44381981
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaa 137  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  44381908 ggataatatttgggtgacattgtggttggtgatattggtgacattgaccaaccacaatgttacacgtgtacaaa 44381981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 10449505 - 10449446
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  10449505 cacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtattatccc 10449446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 35251165 - 35251234
Alignment:
Q  65 ggataatacttgggtgacat--tgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgt 132  Q
    ||||||||||||| ||||||  | | ||||||||||||||||||||||||||||||||||||||||||||    
T  35251165 ggataatacttggatgacatgatatggttggtgatattggtgacattaccaaccacaatgttacaagtgt 35251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 49200122 - 49200058
Alignment:
Q  69 aatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgt 132  Q
    ||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||    
T  49200122 aatacttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgtcacaagtgt 49200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 10449447 - 10449579
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||||| ||||        |||||||||||||| |||||||| ||||  |||       | |||||||||| ||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattg--------accaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaagagaa 10449538  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    |||||||||  | ||||||||||||||||| ||||| ||||    
T  10449539 agaagaaagatatttgtgacattgtggttgaccaatgtcac 10449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 28810061 - 28810105
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgcca 219  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  28810061 cacttgtgacattgtggttgaccaatgtcaccaaccacaatgcca 28810105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 44801806 - 44801751
Alignment:
Q  178 ttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||||||||||||||||||||| ||| ||||||||||  |||| |||||||||||    
T  44801806 ttgtgacattgtggttggccaatgtcatcaaccacaatatcacctaagtattatcc 44801751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 44938852 - 44938794
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||||||||||| ||||||| |||| |||| |||||||||| ||||||||| ||||||    
T  44938852 cacttgtgacattctggttggtcaatgtcactaaccacaatgtcacccaagtgttatcc 44938794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 4579229 - 4579192
Alignment:
Q  171 aagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4579229 aagccacttgtgacattgtggttggccaatgtcaccaa 4579192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 28045449 - 28045487
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  28045449 ccaatgtcaccaaccacaatgtcacccaagtattatccc 28045487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 28739341 - 28739303
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  28739341 ccaatatcaccaaccacaatatcacccaagtattatccc 28739303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 44381945 - 44381907
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  44381945 ccaatatcaccaaccacaatgtcacccaaatattatccc 44381907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 44938872 - 44938914
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttg 194  Q
    |||||||||| |||||||||||||||||||  |||||||||||    
T  44938872 ttgtgaaagagaaagaagaaagccacttgtaccattgtggttg 44938914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 719060 - 719023
Alignment:
Q  163 aaagaagaaagccacttgtgacattgtggttggccaat 200  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  719060 aaagaaaaaagccacttgtgacattgtggttgtccaat 719023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 6539720 - 6539683
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt 109  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539720 acttgggtgacattgtggttgatgatattggtgacatt 6539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 49200035 - 49199994
Alignment:
Q  150 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtgg 191  Q
    |||| |||||||||||||| |||| |||||||||||||||||    
T  49200035 tcttatgaaagaaaaagaaaaaagtcacttgtgacattgtgg 49199994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 50754854 - 50754891
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  50754854 ccaatgtcaccaaccacaatgtcacccaagtattatcc 50754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 593824 - 593876
Alignment:
Q  181 tgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    |||||||||||||  ||||||| |||||| | |||| ||||||||||||||||    
T  593824 tgacattgtggttaaccaatattaccaactataatgtcacccaagtattatcc 593876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 39819230 - 39819087
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatattacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 39819131  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    ||||||||||||| |||||||||||||||||||||| |||||||    
T  39819130 agaagaaagccacatgtgacattgtggttggccaatgtcaccaa 39819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 12918700 - 12918557
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||       |||| ||||||||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaaatgtgcaaaacaacaaaaaagtcttatgaaagaaaa 12918601  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||| |||||||| |||||||||||||||||||||| |||||||    
T  12918600 agaaaaaagccacatgtgacattgtggttggccaatgtcaccaa 12918557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 15562371 - 15562212
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||  |||||  ||||    
T  15562371 ggataatatttgggtgacattatggttggtgatattggtgacattaccaatcacaatgttacaagtgtgcaaaacaacaaaaaaatccagtgaataaaaa 15562272  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaa 224  Q
    ||||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||||    
T  15562271 agaagaaagtcacatgtgacattgtggttggccaatgtcatcaaccacaatgtcacccaa 15562212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 7755469 - 7755342
Alignment:
Q  99 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 198  Q
    |||||||||||||||| ||||||||||||||||| |||||||||       |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  7755469 ttggtgacattaccaatcacaatgttacaagtgtacaaaacaacaaaaaaatcttgttaaagaaaaagaaaaaagccacttgtgacattgtggttggcca 7755370  T
Q  199 atatcaccaaccacaatgccacccaagt 226  Q
    || ||||||||||||||| |||||||||    
T  7755369 atgtcaccaaccacaatgtcacccaagt 7755342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 8921557 - 8921495
Alignment:
Q  234 cctgttactatatctagtcattgacaatctagctatataaagtatgctaaactatgtgctatc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921557 cctgttactatatctagtcattgacaatctagctatataaagtatgctaaactatgtgctatc 8921495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 13421692 - 13421841
Alignment:
Q  77 ggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagcca 176  Q
    |||||||| || |||||||| |||| |||||||| |||  | |||||| ||| |||  ||||||||       ||| || ||||||||| ||||||| ||    
T  13421692 ggtgacatcgtggttggtgacattgatgacattatcaattataatgtttcaaatgtataaaacaacaaaaaaatctcgtaaaagaaaaaaaagaaagtca 13421791  T
Q  177 cttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    | ||| || |||||||||| |||| ||||||||||||||| |||||||||    
T  13421792 catgtaacgttgtggttggtcaatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 34563326 - 34563406
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatc 232  Q
    ||||||||||||| ||||||||  |||||||||||||  ||||| |||| ||||||||||| ||| |||| ||||||||||    
T  34563326 ttgtgaaagaaaatgaagaaagatacttgtgacattgaagttggtcaatgtcaccaaccacgatgtcaccaaagtattatc 34563406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 8921592 - 8921552
Alignment:
Q  21 caagcaagcaaagaaccttaccaataattagtttacctgtt 61  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8921592 caagcaagcaaagaaccttgccaataattagtttacctgtt 8921552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 18182591 - 18182631
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  18182591 agaagaaagccacttgtgacattgtggtttgccaatgtcac 18182631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 39819060 - 39819112
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 123  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 39819112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 12918498 - 12918543
Alignment:
Q  65 ggataatactt-gggtgacattgtcgttggtgatattggtgacatt 109  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||    
T  12918498 ggataatactttgggtgacattgtggttggtgacattggtgacatt 12918543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 12918663 - 12918700
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  12918663 ccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 39819193 - 39819230
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  39819193 ccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 2543735 - 2543895
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||       | |||||||||||||    
T  2543735 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaaaat-ttgtgaaagaaaa 2543833  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    | || |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  2543834 aaaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 2543895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 11448224 - 11448063
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattggtgacattaccaaccacaatgttataagtgtgcaaaacaacaaaaaaaatttgtgaaagaaaa 11448125  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    |||| ||||| || | | |||||||||||||||||||| ||||||||||||| |||||||||    
T  11448124 agaaaaaagctacatataacattgtggttggccaatattaccaaccacaatgtcacccaagt 11448063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 369498 - 369578
Alignment:
Q  153 tgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||    
T  369498 tgtgaaagagaaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 16193830 - 16193888
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  16193830 cacttgtgacattgtggttgaccaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 16193888 - 16193757
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||||| ||||||        |||||||||||| |||||||| |||||| |        | ||||||| || ||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggt--------caaccacaatgtcacaagtgtacaaaacta-aaaaaaatattgtgaaggagaa 16193798  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  16193797 agaagaaagacacttgtgacattgtgattggccaatatcac 16193757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 28581788 - 28581731
Alignment:
Q  176 acttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    |||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||    
T  28581788 acttatgacattgtggttggccaatgtcaccaaccacaatgtcagccaagtattatcc 28581731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 2980786 - 2980842
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacc 221  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||    
T  2980786 agaagaaagccacttgtgacattatggttgaccaatttcaccaaccacaatgtcacc 2980842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 35049816 - 35049754
Alignment:
Q  155 tgaaagaaaaagaagaaa-gccacttgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    |||||||||||||||||| ||||||||| | ||||||||||| ||| |||||||||| |||||    
T  35049816 tgaaagaaaaagaagaaaagccacttgtaatattgtggttggtcaacatcaccaaccgcaatg 35049754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 11448187 - 11448224
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11448187 ccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 2543772 - 2543734
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  2543772 ccaatgtcaccaaccacaatgtcacccaagtattatccc 2543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 28581810 - 28581863
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    |||||||||| ||||||||||| ||||||||| ||||  ||||| |||||||||    
T  28581810 ttgtgaaagagaaagaagaaagacacttgtgatattgatgttggtcaatatcac 28581863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1879243 - 1879187
Alignment:
Q  150 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcacc 206  Q
    |||||||||| | | ||||||||| ||||| |||||||||||||| ||||| |||||    
T  1879243 tcttgtgaaaaatagagaagaaagtcacttatgacattgtggttgaccaatgtcacc 1879187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 31846782 - 31846925
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||| | |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||    
T  31846782 ggataatacttgggtgacattatggttggtgacattcgtgacattaccaaccaaaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 31846881  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  31846882 agaagaaagccacatgtgacattgtggttggccaatatcaccaa 31846925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 6607420 - 6607527
Alignment:
Q  99 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  6607420 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattatggttggtca 6607519  T
Q  199 atatcacc 206  Q
    || |||||    
T  6607520 atgtcacc 6607527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 31012294 - 31012152
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| |||||||||||         |||||||||||||    
T  31012294 ggataatacttaggtgacattgtggttggtgacattagtgacattaccaaccacaatattacaagtatgcaaaacaacaaaaaaaaattgtgaaagaaaa 31012195  T
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcacca 207  Q
    |||| |||| ||| ||||||||||||||||| |||| ||||||    
T  31012194 agaaaaaagtcacatgtgacattgtggttggtcaatgtcacca 31012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 6608500 - 6608375
Alignment:
Q  81 acattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaac-nnnnnnntcttgtgaaagaaaaagaagaaagccactt 179  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||        |||| ||||||||||||||| ||||||| |    
T  6608500 acattgtggttggtgacattggtgacattaccaaccacaatgttacaagtctgcaaaacaacaaaaagaatctt-tgaaagaaaaagaaggaagccacgt 6608402  T
Q  180 gtgacattgtggttggccaatatcacc 206  Q
    |||||||| |||||||||||| |||||    
T  6608401 gtgacattatggttggccaatgtcacc 6608375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 2254698 - 2254622
Alignment:
Q  66 gataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 142  Q
    ||||||||||  |||||||||| ||| |||| |||| ||| |||||||| ||||||||||||||||| |||||||||    
T  2254698 gataatacttatgtgacattgtggttcgtgacattgatgatattaccaatcacaatgttacaagtgtacaaaacaac 2254622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 54223629 - 54223569
Alignment:
Q  156 gaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    |||||| ||||||||||| || |||||||||||||||||| |||| |||||||||||||||    
T  54223629 gaaagagaaagaagaaagacatttgtgacattgtggttggtcaatgtcaccaaccacaatg 54223569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 11392379 - 11392307
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    |||||||||| | |||||||||||  ||||||||||||||| ||||||| ||| ||||||||||| |||||||||    
T  11392379 ttgtgaaagagagagaagaaagcc--ttgtgacattgtggtaggccaatttcatcaaccacaatgtcacccaagt 11392307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 46321496 - 46321429
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaa 138  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||| |||||    
T  46321496 acttgagtgacattgtggttggtgatattggtgacattgaccaaccacaatgtcacaactgtacaaaa 46321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 36273058 - 36273116
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||||||| ||||||||||| |||||||||| ||||||||| ||||||||| ||||||    
T  36273058 cacttgtgatattgtggttggtcaatatcaccgaccacaatgtcacccaagtgttatcc 36273116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 38324924 - 38324974
Alignment:
Q  166 gaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  38324924 gaagaaagccacatgtgatattatggttggccaatatcaccaaccacaatg 38324974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 41306689 - 41306750
Alignment:
Q  155 tgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    ||||||||| ||||||||  || |||||||||| ||||||| ||||||||||||||||||||    
T  41306689 tgaaagaaagagaagaaatacatttgtgacattatggttggtcaatatcaccaaccacaatg 41306750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 43063599 - 43063542
Alignment:
Q  151 cttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||||||||||||  || |||||||||||||||||||||||||||| ||| |||||||    
T  43063599 cttgtgaaagaaagtgatgaaagccacttgtgacattgtggttggctaatgtcaccaa 43063542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30023646 - 30023694
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccaccca 223  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  30023646 cacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcaccca 30023694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 32008402 - 32008336
Alignment:
Q  67 ataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgt 132  Q
    |||| |||||||||||||||| |||||||| ||| |||| ||| |||||||| ||||||||||||||    
T  32008402 ataacacttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgt 32008336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 33380660 - 33380606
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtatt 229  Q
    ||||||| |||||||||||| ||||||||||||||||||||| || | |||||||    
T  33380660 cacttgttacattgtggttgaccaatatcaccaaccacaatgtcatctaagtatt 33380606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 53261143 - 53261093
Alignment:
Q  179 tgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtatt 229  Q
    ||||||||||||||||| |||| ||||||||||||||| |||| |||||||    
T  53261143 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcacctaagtatt 53261093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 9712943 - 9712984
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcacc 206  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  9712943 agaagaaagccacttgtgacattgtggttggtcaatgtcacc 9712984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 22435419 - 22435379
Alignment:
Q  165 agaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  22435419 agaagaaagccacttgtgacattgtggtttgccaatgtcac 22435379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 15031965 - 15032020
Alignment:
Q  67 ataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaat 121  Q
    |||| |||||||||||||||| |||| ||||||| |||||||| ||||||||||||    
T  15031965 ataacacttgggtgacattgtggttgatgatattcgtgacattgaccaaccacaat 15032020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 31846952 - 31846900
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 123  Q
    |||||||||||||||| |||||||| |||||||| |||  |||||||||||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgt 31846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 40789263 - 40789311
Alignment:
Q  178 ttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||||||| ||||||||||||||||| | | ||| |||||||||    
T  40789263 ttgtgacattgtgattggccaatatcaccaaactctatgtcacccaagt 40789311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 54613030 - 54613082
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 123  Q
    |||||||||||||||| |||||||| ||| ||| |||| ||||||||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgt 54613082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 5215560 - 5215722
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 164  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||    
T  5215560 ggataatacttgggtgacattgtggttggtaacattggtgacattaccaaccacaatgttacaagtgtacaaaacaacaacaaaatcttgtgaaagaaaa 5215659  T
Q  165 agaag-aaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    | ||| |||||||| ||||| |||||||||| ||||| ||| ||||||||||| |||||||||    
T  5215660 ataagaaaagccacatgtgatattgtggttgaccaatgtcatcaaccacaatgtcacccaagt 5215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 9177863 - 9177997
Alignment:
Q  92 ggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtgg 191  Q
    ||||| |||| ||||| ||||||||||||||||| |||||||||||||||        | |||||||||||||||||||||| ||| ||||| |||||||    
T  9177863 ggtgacattgatgacactaccaaccacaatgttataagtgtgcaaaacaataaaaaaatattgtgaaagaaaaagaagaaagtcacatgtgatattgtgg 9177962  T
Q  192 ttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||||||||||||||||||| || ||||||    
T  9177963 ttggccaatatcaccaaccacaatgtcatccaagt 9177997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 29385303 - 29385419
Alignment:
Q  92 ggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtgg 191  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||       ||| | |||||||||||||||||||||| |||||||||||||    
T  29385303 ggtgacattagtgatattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatctagcgaaagaaaaagaagaaagccacatgtgacattgtgg 29385402  T
Q  192 ttggccaatatcaccaa 208  Q
    ||||||||| |||||||    
T  29385403 ttggccaatgtcaccaa 29385419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 19417595 - 19417469
Alignment:
Q  81 acattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttg 180  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||  ||||||| ||| ||    
T  19417595 acattgtggttggtgacattggtgacattaccaaccacaatgtt-caagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaagaaagaaagtcacatg 19417497  T
Q  181 tgacattgtggttggccaatatcaccaa 208  Q
    ||||||||| |||| ||||| |||||||    
T  19417496 tgacattgtagttgaccaatgtcaccaa 19417469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 36568872 - 36568736
Alignment:
Q  64 tggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaa 163  Q
    ||||||||||||  |||||||||| |||||||| ||| ||||||| | ||||||||||||||||||||| |||||||||       | ||||||||||||    
T  36568872 tggataatacttatgtgacattgtggttggtgacattagtgacataatcaaccacaatgttacaagtgtacaaaacaac-aaaaaatattgtgaaagaaa 36568774  T
Q  164 aagaagaaagccacttgtgaca-ttgtggttggccaat 200  Q
    | |||||||||||| ||||||| ||||||||| |||||    
T  36568773 aggaagaaagccacatgtgacatttgtggttgaccaat 36568736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 1840053 - 1840003
Alignment:
Q  150 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1840053 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaat 1840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 23219360 - 23219432
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaa 224  Q
    |||||||||||||||||||||| ||  | |||||||||||||||||||  ||||||||||||||| |||||||    
T  23219360 ttgtgaaagaaaaagaagaaagtcatatatgacattgtggttggccaaggtcaccaaccacaatgtcacccaa 23219432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 896350 - 896268
Alignment:
Q  151 cttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    ||||| ||||| |||||||||| || | ||||||||||||||||  |||||||||||||||||||  ||||||||| ||||||    
T  896350 cttgtaaaagagaaagaagaaaaccgcctgtgacattgtggttgatcaatatcaccaaccacaatctcacccaagtgttatcc 896268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 25879328 - 25879447
Alignment:
Q  93 gtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggt 192  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||        ||||||||   |||||    |||  ||| ||||||||||||||    
T  25879328 gtgatattggtgacattatcaaccacaatgttacaagtgtataaaacaataaaaaagtcttgtgacgaaaaaa----aaaatcacatgtgacattgtggt 25879423  T
Q  193 tggccaatatcaccaaccacaatg 216  Q
    |||| |||||||||||||||||||    
T  25879424 tggctaatatcaccaaccacaatg 25879447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 42772054 - 42772107
Alignment:
Q  163 aaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  42772054 aaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatg 42772107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 31848239 - 31848177
Alignment:
Q  150 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaaccaca 213  Q
    |||||||||||| | |||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  31848239 tcttgtgaaagagagagaagaaa-ccacttgtgaccttgtggttggtcaatatcaccaaccaca 31848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 7137637 - 7137698
Alignment:
Q  71 tacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtg 131  Q
    ||||||||||||||||  |||||||| |||||||||||| |||||||||||||| |||||||    
T  7137637 tacttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtg 7137698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 7137721 - 7137665
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||    
T  7137721 ttgtgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaatgtcaccaa 7137665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 41287997 - 41288041
Alignment:
Q  189 tggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||    
T  41287997 tggttggccaatatcaccaaccacaatgtcacccaaatattatcc 41288041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 12605660 - 12605715
Alignment:
Q  179 tgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    |||||||||||||||| ||||| ||||||||||||||| |||  ||||||||||||    
T  12605660 tgtgacattgtggttgaccaatgtcaccaaccacaatgtcacttaagtattatccc 12605715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 29385446 - 29385394
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 123  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 29385394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 5998620 - 5998659
Alignment:
Q  164 aagaagaaagccacttgtgacattgtggttggccaatatc 203  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  5998620 aagaagaaagtcacttgtgatattgtggttggccaatatc 5998659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 37325634 - 37325664
Alignment:
Q  170 aaagccacttgtgacattgtggttggccaat 200  Q
    |||||||||||||||||||||||||||||||    
T  37325634 aaagccacttgtgacattgtggttggccaat 37325664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 41288042 - 41288004
Alignment:
Q  64 tggataatacttgggtgacattgtcgttggtgatattgg 102  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  41288042 tggataatatttgggtgacattgtggttggtgatattgg 41288004  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 19417442 - 19417479
Alignment:
Q  72 acttgggtgacattgtcgttggtgatattggtgacatt 109  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  19417442 acttgggtgacattgtggttggtgacattggtgacatt 19417479  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 43465256 - 43465112
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccac---aatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaaga 161  Q
    ||||||||||||| ||||||| | |||||||| |||||||| ||||||||||||   ||||||||||||||||||||||||       |||||||||| |    
T  43465256 ggataatacttggatgacattctggttggtgacattggtgaaattaccaaccaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaaaa 43465157  T
Q  162 aaaagaagaaagccacttgtgacattgtggttggccaatatcacc 206  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||    
T  43465156 aaaagaagaaagccacatgtgatattgtggttggccaatgtcacc 43465112  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 31470914 - 31470771
Alignment:
Q  64 tggataatacttggg-tgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaaga 161  Q
    ||||||||||||||| ||| ||||| ||||||| |||||||||||||  ||||||||||||| |||||||| ||||  |||       | ||||||||||    
T  31470914 tggataatacttggggtgatattgtggttggtggtattggtgacattggccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaaga 31470815  T
Q  162 aaaagaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    |||||||||| |  |||||||||||||||||||| |||| ||||    
T  31470814 aaaagaagaatgatacttgtgacattgtggttggtcaatgtcac 31470771  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 16687512 - 16687585
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacatta-ccaaccacaatgttacaagtgtgcaaa 137  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||  ||||||| ||||    
T  16687512 ggataatacttggatgacattgtggttggtgatattggtgacattagctaaccacaatgtcccaagtgtacaaa 16687585  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 1605082 - 1605038
Alignment:
Q  65 ggataatacttgggtgacattgtcgttggtgatattggtgacatt 109  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  1605082 ggataatacttgggtgacattgtagttggtgacattggtgacatt 1605038  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 4531845 - 4531902
Alignment:
Q  176 acttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatcc 233  Q
    |||||||||||||||||||| ||||||||||||| |||||| || | |||| ||||||    
T  4531845 acttgtgacattgtggttggtcaatatcaccaactacaatgtcatctaagttttatcc 4531902  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 7931550 - 7931655
Alignment:
Q  101 ggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaa 199  Q
    ||||||||| |||||||||||||| |||||||| ||||  |||       | || ||||||| ||||||||||| || |||||||||||||||| |||||    
T  7931550 ggtgacattgaccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattatgaaagagaaagaagaaagacatttgtgacattgtggtttgccaa 7931649  T
Q  200 tatcac 205  Q
    | ||||    
T  7931650 tgtcac 7931655  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 16687549 - 16687511
Alignment:
Q  196 ccaatatcaccaaccacaatgccacccaagtattatccc 234  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  16687549 ccaatatcaccaaccacaatgtcatccaagtattatccc 16687511  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 33763539 - 33763589
Alignment:
Q  155 tgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    ||||||||||||||||||| ||||||||| ||||| |||| ||||| ||||    
T  33763539 tgaaagaaaaagaagaaaggcacttgtgatattgtagttgaccaatgtcac 33763589  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 31470845 - 31470878
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||||||||||||||||||||||||| |||||||    
T  31470845 cacttgtgacattgtggttggccaatgtcaccaa 31470878  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 45051343 - 45051380
Alignment:
Q  179 tgtgacattgtggttggccaatatcaccaaccacaatg 216  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  45051343 tgtgacattgtggtcggccaatgtcaccaaccacaatg 45051380  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 33763505 - 33763461
Alignment:
Q  185 attgtggttggccaatatcaccaaccacaatgccacccaagtatt 229  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||||    
T  33763505 attgtggttgaccaatgtcaccaaccacaatgtcacccaattatt 33763461  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 12225 - 12270
Alignment:
Q  64 tggataatacttgggtgacattgtcgttggtgatattggtgacatt 109  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||    
T  12225 tggataatacttgggtgacattgtagttggtgacattgatgacatt 12270  T

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Target: scaffold0343; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 12285 - 12338
Alignment:
Q  152 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcac 205  Q
    |||||||||| ||||||||| | ||||||||||||||||||||| |||| ||||    
T  12285 ttgtgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgtcac 12338  T

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Target: scaffold1315 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 1870 - 1819
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||| ||||||||||  |||| ||||||||||||||| |||||||||    
T  1870 cacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagt 1819  T

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Target: scaffold1293 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 201 - 252
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagt 226  Q
    ||||||||| ||||||||||  |||| ||||||||||||||| |||||||||    
T  201 cacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagt 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 507798 - 507740
Alignment:
Q  150 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatatcaccaa 208  Q
    |||||||||||| |||||||||| |||||||| | |||||| |||| |||| |||||||    
T  507798 tcttgtgaaagagaaagaagaaatccacttgtaatattgtgattggtcaatgtcaccaa 507740  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 26557 - 26500
Alignment:
Q  175 cacttgtgacattgtggttggccaatatcaccaaccacaatgccacccaagtattatc 232  Q
    ||||||||| |||||| ||| ||||| ||||||||||||||| |||  ||||||||||    
T  26557 cacttgtgatattgtgtttgaccaatgtcaccaaccacaatgtcacataagtattatc 26500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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