View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10550_low_1 (Length: 420)
Name: NF10550_low_1
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10550_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 414
Target Start/End: Original strand, 30959666 - 30960069
Alignment:
| Q |
31 |
tcgaatcatttatgacttccttatgtaaagtaaccgagaagagtaaaacatgtaaagcaaaacaaaatagaagaaggtaaaccccaacaaagtgaagaaa |
130 |
Q |
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| T |
30959666 |
tcgaatcatttatgacttccttatgttaagtaaccgagaagagtaaaacatgtaaagcaaaacaaaatagaagaaggtaaaccccaacaaagtgaagaaa |
30959765 |
T |
|
| Q |
131 |
atagtttgcaaaagaaaagatatagagtatttcaaacaagaaataaaccaagatgcacatctttatatataggaat-------------------tgtct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30959766 |
atagtttgcaaaagaaaagatatagagtatttcaaacaagaaataaaccaagatgcacatctttatatataggaattgtcttgcaaggcatgaaatgtct |
30959865 |
T |
|
| Q |
212 |
tgcgtgattcattgtgatccaaattattcaactccgggcaatatgcatcatctcccctaaacatcatgttg-nnnnnnnnnnttcacaaattccttgaat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30959866 |
tgcgtgattcattgtgatccaaattattcaactccgggcaatatgcatcatctcccctaaacatcatgttgaaagaaaaaaattcacaaattccttgaat |
30959965 |
T |
|
| Q |
311 |
aaacaatcaaaatattagggttattgttcaaacacaaataattatagtgatgataaaacattggttgtgttgcaagtaaaattgtctttctcgcttcttc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30959966 |
aaacaatcaaaatattagggttattgttcaaacacaaataattatagtgatgataaaacattggttgtgttgcaagtaaaattgtctttctcgctttttc |
30960065 |
T |
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| Q |
411 |
tctc |
414 |
Q |
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|||| |
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| T |
30960066 |
tctc |
30960069 |
T |
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