View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10550_low_2 (Length: 356)
Name: NF10550_low_2
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10550_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 55 - 345
Target Start/End: Original strand, 20933252 - 20933558
Alignment:
| Q |
55 |
ttgagttgttccctactgttgactcgttgaccgtacagt-actgtgtaaaccctaaattggaaccactccttattcccattccatttttcggt------- |
146 |
Q |
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| T |
20933252 |
ttgagttgttccctactgttgactcgttgaccgtacagttactgtgtaaaccctaaattggaaccactccttattcccattccatttttcggtaagaaga |
20933351 |
T |
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| Q |
147 |
--------tcttcattatttctttcttccactacttctcgttcatttcaattccttacttctttattattatgttttcaaattaattaatgtttttgttt |
238 |
Q |
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| T |
20933352 |
tttttggttcttcattatttctttcttccactacttctcgttcatttcaattccttacttctttattattatgttttcaaattaattaatgtttttgttt |
20933451 |
T |
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| Q |
239 |
gtcgtaggcgtaacacattcagaatattattgcatataattttcctggaactactcaatcggtaacttcacatggtaactctctaatttctttctgagtt |
338 |
Q |
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| T |
20933452 |
gtcgtaggcgtaacacattcagaatattattgcatattattttcctggaactactcaatcggtaacttcacatggtaactctctaatttctttctgagtt |
20933551 |
T |
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| Q |
339 |
caatttg |
345 |
Q |
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| T |
20933552 |
caatttg |
20933558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 169 - 345
Target Start/End: Original strand, 20952029 - 20952193
Alignment:
| Q |
169 |
ctacttctcgttcatttcaattccttacttctttattattatgttttcaaattaattaatgtttttgtttgtcgtaggcgtaacacattcagaatattat |
268 |
Q |
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| T |
20952029 |
ctacttctcgttcatttcaattcctttcttattt---------ttttcaaactaattaatgtttttgtttggtgtagcaat--cacatt-agaagattat |
20952116 |
T |
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| Q |
269 |
tgcatataattttcctggaactactcaatcggtaacttcacatggtaactctctaatttctttctgagttcaatttg |
345 |
Q |
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| T |
20952117 |
tgcgtctaattttcctggaacttctcaatcggtaacttctcatggtaattctctaatttctttctgagttcaatttg |
20952193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20933214 - 20933257
Alignment:
| Q |
1 |
agccattaaagaataattgttcaaatatatgtctagttttgagt |
44 |
Q |
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| T |
20933214 |
agccattaaagaataattctacaaatatatgtctagttttgagt |
20933257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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