View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10550_low_3 (Length: 348)
Name: NF10550_low_3
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10550_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 44383309 - 44382985
Alignment:
| Q |
16 |
atttgcactataagaaaatgaagctgagatattttaaattggtgaaggttcttaatttttcaacctttatttaaatattaaacttaaattactaaaaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44383309 |
atttgcactataagaaaatgaagctgagatattttaaattggtgaaggttcttaatttttcaacctttatttaaatattaaacttatattactaaaaaat |
44383210 |
T |
|
| Q |
116 |
gtttatgggcacaattaaattgttgagtatataaaaatgtggtgatataaatactataccctacattaaagagatgtataagaagcaaatttatcactaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44383209 |
gtttatgggcacaattaaattgttgagtatataaaaatgtggtgatataaatacta--ccctacattaaagagatgtataagaagcaaatttatcactaa |
44383112 |
T |
|
| Q |
216 |
tttattaaggtctcagtagaggcagaaaatttacagaattagtaatactttggcattacttttgtctggtaatgcttggcagggtttaaatgagattcag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44383111 |
tttattaaggtctcagtagaggcagaaaatttacagaatcagtaatactttggcattacttttgtctggtaatgcttggcagggtttaaatgagattcag |
44383012 |
T |
|
| Q |
316 |
tatcacatgttatttcacctttgcttc |
342 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
44383011 |
tatcacatgttatttcaccttttcttc |
44382985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University