View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10550_low_4 (Length: 327)
Name: NF10550_low_4
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10550_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12825323 - 12825631
Alignment:
| Q |
1 |
agcagccacgtaaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccct |
99 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
12825323 |
agcagccgcgtaaggcattccctcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacacct |
12825422 |
T |
|
| Q |
100 |
ttacatcatccaccatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |
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|
| T |
12825423 |
ttacatcatccaccatttcatccaccgctgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaactcgtagaatgccgaataag |
12825522 |
T |
|
| Q |
200 |
tcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaacttatccaatcac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
12825523 |
tcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaaagaacgaataaattaggcggaattaaatgaaacttatcccatcac |
12825622 |
T |
|
| Q |
300 |
ccccattac |
308 |
Q |
| |
|
||||||||| |
|
|
| T |
12825623 |
ccccattac |
12825631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 35400893 - 35400749
Alignment:
| Q |
27 |
ttccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccg |
126 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| ||||||||||| | ||| | ||||| ||| |||| |||||||||||||||||| |||| |
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|
| T |
35400893 |
ttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacatcatccaccatttcacccacat |
35400794 |
T |
|
| Q |
127 |
ccgagttccgattattaaaaatcttatcattccttgctttccaca |
171 |
Q |
| |
|
|| || || |||||||||| |||||||||||| |||||||||| |
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|
| T |
35400793 |
acggatttcggttattaaaaaccttatcattcctcgctttccaca |
35400749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 35024563 - 35024688
Alignment:
| Q |
155 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
254 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| |||||||||||| ||||| | ||||| ||| |||||||||||| || || |||||||||||||| |
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|
| T |
35024563 |
attcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaa |
35024662 |
T |
|
| Q |
255 |
tgaacgaataaattaggcggaattaa |
280 |
Q |
| |
|
| | ||| || ||||| |||||||| |
|
|
| T |
35024663 |
aggatgaagaagttagggggaattaa |
35024688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 37035710 - 37035442
Alignment:
| Q |
12 |
aaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatcc |
110 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||| |||||||||||||||| | |||| | ||||||||||||||||||||||| |||| | ||| ||| |
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|
| T |
37035710 |
aaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaataccttaatatcctcc |
37035611 |
T |
|
| Q |
111 |
accatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccat |
210 |
Q |
| |
|
|| || || ||||| ||| |||||||||||||||||||| ||||| || |||||||| |||||| ||||||| ||||||||| | |||||| || | |
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|
| T |
37035610 |
acaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccct |
37035511 |
T |
|
| Q |
211 |
tacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaatta |
279 |
Q |
| |
|
||| || |||||| ||||||| || |||| |||||||||||| || ||||||||||||||||||| |
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|
| T |
37035510 |
gacgaatacgcttaatcctctccccgccactccaacactcccataagacaaataaattaggcggaatta |
37035442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 24189517 - 24189425
Alignment:
| Q |
188 |
atgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaa |
280 |
Q |
| |
|
||||||||||||||||| || ||||| |||| ||||||| ||| ||||||| ||||||||||||| || |||| || |||||| ||||||| |
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|
| T |
24189517 |
atgccaaataagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaaagagcgaacaagttaggcagaattaa |
24189425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 24189660 - 24189605
Alignment:
| Q |
33 |
caccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca |
88 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
24189660 |
caccattcatagtacatacacggaggcatagagattctatccaaagaccatcgcca |
24189605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 47820348 - 47820122
Alignment:
| Q |
24 |
ggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatcca |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||| ||| | ||| | ||||||||||||| |||||| | | |||| | ||| ||||| || ||||| |
|
|
| T |
47820348 |
ggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaat---atcca |
47820252 |
T |
|
| Q |
124 |
ccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgctt |
223 |
Q |
| |
|
|| || | ||||||||||| || ||||| |||||||| |||||||| |||||| ||||||||| ||||||||| | |||||| || ||| || | ||| |
|
|
| T |
47820251 |
ccaccaaattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactctt |
47820152 |
T |
|
| Q |
224 |
attcctctctccaccacaccaacactccca |
253 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |
|
|
| T |
47820151 |
cttcctctccccaccgcaccaacactccca |
47820122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 28571679 - 28571641
Alignment:
| Q |
242 |
ccaacactcccaatgaacgaataaattaggcggaattaa |
280 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
28571679 |
ccaacactcccaatgcacaaataaattaggcggaattaa |
28571641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 34774684 - 34774809
Alignment:
| Q |
155 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
254 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || ||||| ||| |||||||||||| || || ||||||||||||||| |
|
|
| T |
34774684 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa |
34774783 |
T |
|
| Q |
255 |
tgaacgaataaattaggcggaattaa |
280 |
Q |
| |
|
| | ||| || ||||| |||||||| |
|
|
| T |
34774784 |
aggatgaagaagttagggggaattaa |
34774809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 11780156 - 11779930
Alignment:
| Q |
28 |
tccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgc |
127 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| | | | |||| | || ||||| ||||| ||||| | |
|
|
| T |
11780156 |
tccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaaccttaatctcctccacaatttcttccacatc |
11780057 |
T |
|
| Q |
128 |
cgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattc |
227 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||| |||||||| || | | ||| | ||||||||||||| | || |||| ||||| ||||| | |
|
|
| T |
11780056 |
cggattccggccattaaaaactctatcattccttgccttccacaacccccacaccgttgcgtgccaaataagtcgaagccccttacagattctcttatcc |
11779957 |
T |
|
| Q |
228 |
ctctctccaccacaccaacactcccaa |
254 |
Q |
| |
|
|||||| |||||| ||||||||||||| |
|
|
| T |
11779956 |
ctctctacaccactccaacactcccaa |
11779930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 42748870 - 42748995
Alignment:
| Q |
155 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
254 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || |||| ||| |||||||||||| || || | ||||||||||||| |
|
|
| T |
42748870 |
attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa |
42748969 |
T |
|
| Q |
255 |
tgaacgaataaattaggcggaattaa |
280 |
Q |
| |
|
||| ||| || ||||| |||||||| |
|
|
| T |
42748970 |
agaatgaagaagttagggggaattaa |
42748995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 47318630 - 47318661
Alignment:
| Q |
22 |
tcggattccaacaccattcataatacatacaa |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47318630 |
tcggattccaacaccattcataatacatacaa |
47318661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 38553154 - 38553114
Alignment:
| Q |
144 |
aaaatcttatcattccttgctttccacaaaaccaaaatcgt |
184 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
38553154 |
aaaatcttatcattcctagctttccacaacacccaaatcgt |
38553114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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