View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10550_low_6 (Length: 241)
Name: NF10550_low_6
Description: NF10550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10550_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13554266 - 13554488
Alignment:
| Q |
1 |
atacataagcttgttccaggagtatgtctaacaattatggaccttcaaaaacatgattcatatgattaacgatactcggtaaagttcaaatcgatcttta |
100 |
Q |
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| T |
13554266 |
atacataagctcgttccaggagtatgtctaacaattatggaccttcaaaaacatgattcatgtgattaacgatactcggtaaagttcaaatcgatcttta |
13554365 |
T |
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| Q |
101 |
aatgaaagagtttttagttaaactttacttgtatcgaaaaaagaattatataaataattacaatggttgtattgcagatggcaaaaccaactttgtgcta |
200 |
Q |
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| T |
13554366 |
aatgaaagagtttttagttaaactttacttgtatcgaaaaaagaattatataaataattataatggttgtattgcagatggcaaaaccaactttgtgcta |
13554465 |
T |
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| Q |
201 |
cacaaattagatgcagtagatga |
223 |
Q |
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| T |
13554466 |
cacaaattagatgcagtagatga |
13554488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13530357 - 13530516
Alignment:
| Q |
1 |
atacataagcttgttccaggagtatgtctaacaattatggaccttcaaaaaca---tgattcatatgattaacgatactcggtaaagttcaaatcgatct |
97 |
Q |
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| T |
13530357 |
atacataagcttgtaccaagggcatgtctaataattatggaccttcaaaaaaaaaatgattcaggtgattcaggacacttggtaaagttcaaaacgatct |
13530456 |
T |
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| Q |
98 |
ttaaatgaaagagtttttagttaaactttacttgtatcgaaaaaagaattatataaataa |
157 |
Q |
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| T |
13530457 |
ttaaccgaaagagtttttagtcaaactatacttatattgaaaaaagaactatataaataa |
13530516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 13530694 - 13530766
Alignment:
| Q |
151 |
taaataattacaatggttgtattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatga |
223 |
Q |
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| T |
13530694 |
taaataattataatggttatattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatga |
13530766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 13537569 - 13537617
Alignment:
| Q |
163 |
atggttgtattgcagatggcaaaaccaactttgtgctacacaaattaga |
211 |
Q |
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| T |
13537569 |
atggttgtattgtaggtggcaaaaccgactatgtgctacacaaattaga |
13537617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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