View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_high_11 (Length: 275)
Name: NF10551_high_11
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 40841729 - 40841976
Alignment:
| Q |
18 |
aagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatataca |
117 |
Q |
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| T |
40841729 |
aagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatataca |
40841828 |
T |
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| Q |
118 |
aaccaattggactgaactcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattgagtactgcacagtcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
40841829 |
aaccaattggactgaactcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattcagtgccgcacagtcatt |
40841928 |
T |
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| Q |
218 |
gtcgtccaacttcaaaaattccaacactttattccatgcatacctttg |
265 |
Q |
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| T |
40841929 |
gttgtccaacttcaaaaattccaacactttattccatgaatacctttg |
40841976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 31474159 - 31474386
Alignment:
| Q |
18 |
aagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatataca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31474159 |
aagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttcccactgatattattatttcttccttaagcttcttatcatataca |
31474258 |
T |
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| Q |
118 |
aaccaattggactgaa----------ctcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattgagtactg |
207 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
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| T |
31474259 |
aaccaattggactgaactctgtacatctcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcgtcattgagtgccg |
31474358 |
T |
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| Q |
208 |
cacagtcattgtcgtccaacttcaaaaa |
235 |
Q |
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|| ||||||||| ||||||||||||||| |
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| T |
31474359 |
catagtcattgttgtccaacttcaaaaa |
31474386 |
T |
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