View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10551_high_12 (Length: 273)
Name: NF10551_high_12
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 25014121 - 25014363
Alignment:
| Q |
16 |
caaacaacaatttgattagatgtgtgtgattatgaaattcaatagaggatagtttgagtagacaatttttccatatgttcttaagtttccaagggactat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25014121 |
caaacaacaatttgattagatgtgtgtgattatgaaattca-tagaggatagtttgagtagacaatttttccttatgttcttaagtttccaagggactat |
25014219 |
T |
|
| Q |
116 |
ataaggagacttgaacgccaaacaagctaatttagaatcactttcaatccataagtaattccaattcttcatataggcagtttccacaacaatactcact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
25014220 |
ataaggagacttgaacgccaaacaagctattttagaatcactttcaatccataagtgattccaattcttcatatagtcagtttccacagcaatactcact |
25014319 |
T |
|
| Q |
216 |
ccc----attagctcagcaaagagagcatttgaaataccaagat |
255 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25014320 |
cccattaattagctcagcaaagagagcatttgaaataccaagat |
25014363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 32 - 255
Target Start/End: Original strand, 33068068 - 33068289
Alignment:
| Q |
32 |
tagatgtgtgtgattatgaaattcaatagaggatagtttgagtagacaatttttccatatgttcttaagtttccaagggactatataaggagacttgaac |
131 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| ||||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
33068068 |
tagatgtgtgtgatcatgaaattca-tataggacagtttgactaggggatttttccatctgttcttaagtttccaaggcactatatgaggagacttgaac |
33068166 |
T |
|
| Q |
132 |
gccaaacaagctaatttagaatcactttcaatccataagtaattccaattcttcatataggcagtttccacaacaatactcactcccattagctcagcaa |
231 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
33068167 |
gccaagcaagctaatttagaatcactttcaatccataagtgatt-cgattcttcatataggcagtttccacaacagtaatcactcccattagcttagcaa |
33068265 |
T |
|
| Q |
232 |
agagagcatttgaaataccaagat |
255 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
33068266 |
agagagcatttgaaattccaagat |
33068289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 19955338 - 19955175
Alignment:
| Q |
84 |
ttccatatgttcttaagtttccaagggactatataaggagacttgaacgccaaacaagctaatttagaatcactttcaatccataagtaattccaattct |
183 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| | | |||||||||| ||||| ||| || || ||||||||||||||||||||| |||| | || | |
|
|
| T |
19955338 |
ttccatatattcttgagcttccaaggaactatgtgatgagacttgaaggccaaggtagccaactttaaatcactttcaatccataagtgattctagtttt |
19955239 |
T |
|
| Q |
184 |
tcatataggcagtttccacaacaatactcactcccattagctcagcaaagagagcatttgaaat |
247 |
Q |
| |
|
| ||| ||| |||||| ||| | | |||||||| || |||||| ||| || ||||||||||| |
|
|
| T |
19955238 |
tgtcataagcaatttccaaaactaaaatcactccctttggctcaggaaaaagggcatttgaaat |
19955175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University