View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10551_high_14 (Length: 240)
Name: NF10551_high_14
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 10979925 - 10980150
Alignment:
| Q |
18 |
agtttgagcaaattgtagctcatgagtactatggatagagaaaaacaaagaaagaaccacaagattgagatataaatatctcattggactaaatgtaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10979925 |
agtttgagcaaattgtagctcatgagtactatggatagagaaaaacaatgaaagaaccacaagattgagataaaaatatctcattggactaaatgtaaaa |
10980024 |
T |
|
| Q |
118 |
attagactc--aagaatttttcaaatttttcgatcacaactctgaactaactcagactctgaactcattcagactctgaactcaactcgg-acaatagaa |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
10980025 |
attagactcaaaagaatttttcaaatttttcgatcacaactctgaactaactcagactctgaactcattcagactctgaactcaactcggaagaatagaa |
10980124 |
T |
|
| Q |
215 |
ctaaatataatattgaaaaggaaatt |
240 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
10980125 |
ctaaatataatcttgaaaaggaaatt |
10980150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University