View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_high_15 (Length: 239)
Name: NF10551_high_15
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 11843200 - 11842993
Alignment:
| Q |
17 |
tgtgctatgattccatcttcttgttgtgctgttgttaatggagaaaatatggggaatattagagctaagatgatatgaaatattgtaaattgcagaatca |
116 |
Q |
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| T |
11843200 |
tgtgctatgattccatcttcttgttgtgctgatgttaatggaggaaatatggggaatattagagctaagatgatatgaaatattgtaaattgcagaatca |
11843101 |
T |
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| Q |
117 |
ttgtttagagctaattaagtataactgtaaatttgtttagaggaagtttaattgtggatcttagaagcagcttatttatgatttgtattaagtgttaacc |
216 |
Q |
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| T |
11843100 |
ttgtgtagagctaattaagtttaactgtaaatttgtttagaggaagtttaattgtggatcttagaagcagcttatttatgatttgtattaagtgttaacc |
11843001 |
T |
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| Q |
217 |
atgctaat |
224 |
Q |
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|||||||| |
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| T |
11843000 |
atgctaat |
11842993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 11847883 - 11847755
Alignment:
| Q |
16 |
ctgtgctatgattccatcttcttgttgtgctgttgttaatggagaaaatatggggaatattagagctaagatgatatgaaatattgtaaattgcagaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11847883 |
ctgtgctatgattccatcttcttgttgtgctgatgttaatggaggaaatatggggaatattagagctaagatgatatgaaatattgtaaactgcagaatc |
11847784 |
T |
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| Q |
116 |
attgtttagagctaattaagtataactgt |
144 |
Q |
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| T |
11847783 |
attgtttagagctaattaagtttaactgt |
11847755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 11847766 - 11847730
Alignment:
| Q |
160 |
aagtttaattgtggatcttagaagcagcttatttatg |
196 |
Q |
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| T |
11847766 |
aagtttaactgtggatcttagaagcagcttatttatg |
11847730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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