View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10551_high_17 (Length: 219)
Name: NF10551_high_17
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3837712 - 3837908
Alignment:
| Q |
1 |
agcttctgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaaataaaacacttgccacactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3837712 |
agcttctgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaagtaaaacacttgccacactt |
3837811 |
T |
|
| Q |
101 |
caatgatagattcattggtact-aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatccatttcgtcagggt |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3837812 |
caatgatagattcattggtactaaaactgtaccaattcaaaagctcgttgatagcacatagctgccttcttagcataataatccatttcgtcagggt |
3837908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 3831536 - 3831719
Alignment:
| Q |
7 |
tgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgtta--cacaatttttacaagtcaacaaataaaacacttgccacacttcaat |
104 |
Q |
| |
|
||||||| ||| |||| ||| ||||||||||||||| | |||| ||||| || ||||||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
3831536 |
tgcggtacatttcatttgaaggatcctatataaaacaggaaacactttgttaagcataatttttacaagtcaacaagtacaacactttccacacttcaat |
3831635 |
T |
|
| Q |
105 |
gatagattcattggtact------aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatc |
182 |
Q |
| |
|
|||| ||||||||||| | ||| ||||||| ||||||||| |||||||||| | | ||||||||| | ||||||||| |
|
|
| T |
3831636 |
gatacattcattggtattgaacaaaaattgtaccaaatcaaaagcttgttgatagcatgcaattgccttctttgaataataatc |
3831719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 8587287 - 8587336
Alignment:
| Q |
66 |
tttacaagtcaacaaataaaacacttgccacacttcaatgatagattcat |
115 |
Q |
| |
|
||||||||||||| | ||||| |||| |||||||||||||||| |||||| |
|
|
| T |
8587287 |
tttacaagtcaacgagtaaaatacttcccacacttcaatgatacattcat |
8587336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University