View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10551_high_2 (Length: 513)
Name: NF10551_high_2
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 5 - 507
Target Start/End: Original strand, 51821042 - 51821544
Alignment:
| Q |
5 |
cagcaatttcataccttgtttcccaatcaagctccatcttgccactactatgaagcctatcccacaaacttccattaggcaaatactcatagaccaaaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51821042 |
cagcaatttcataccttgtttcccaatcaagctccatcttgccactactatgaagcctatcccacaaacttccattaggcaaatactcataaaccaaaag |
51821141 |
T |
|
| Q |
105 |
acttgaatcctcactcgttatactacaataaagcttcaccacattcacatgtcttattgaactcaacgcatgaacctccgcatcgaattccttcgacctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51821142 |
acttgaatcctcactcgttatactacaataaagcttcaccacattcacatgtcttattgaactcaacgcatgaacctccgcatcgaattccttcgacctt |
51821241 |
T |
|
| Q |
205 |
gaaccaccactaccaacgcgctttgcgagcatcggtgtgctgctccatgactttttccgtgacccgaaatcggtgttccaaatatgcttaacagcaagtt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
51821242 |
gaaccaccactaccaacgcgctttgcgagcatcggtgtgctgctccatgactttttccgggacccaaaattggtgttccaaatatgcttaacagcaagtt |
51821341 |
T |
|
| Q |
305 |
cttttccatttgcaagggtgactctataaacattccctgaacctcctgttcctattatattctcttgcttaacagaatcaagaatctcatcttctgtgaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51821342 |
cttttccatttgcaagggtgactctataaacattccctgaacctcctgttcctattatattctcttgcttaacagaatcaagaatctcatcttctgtgaa |
51821441 |
T |
|
| Q |
405 |
acttggcacgtggaaagatttcacatcccatgattcttcctttaaagaacgttctctgccatatttaccaccctctccgttttctaccttccccctttgc |
504 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
51821442 |
acttagcacgtggaaagatttcacatcccatgattcttcctttaaagaacgttctcttccatatttactaccctctccgttttctaccttcccctttttc |
51821541 |
T |
|
| Q |
505 |
ttc |
507 |
Q |
| |
|
||| |
|
|
| T |
51821542 |
ttc |
51821544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University