View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10551_high_4 (Length: 398)

Name: NF10551_high_4
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10551_high_4
NF10551_high_4
[»] chr2 (6 HSPs)
chr2 (1-388)||(2335982-2336372)
chr2 (154-324)||(2312995-2313155)
chr2 (251-344)||(2343646-2343739)
chr2 (11-105)||(2343405-2343499)
chr2 (13-77)||(2312825-2312889)
chr2 (343-381)||(2313595-2313633)
[»] chr4 (1 HSPs)
chr4 (252-340)||(36800204-36800292)
[»] chr5 (1 HSPs)
chr5 (272-341)||(12969834-12969903)
[»] scaffold1031 (1 HSPs)
scaffold1031 (275-340)||(2385-2450)
[»] chr8 (5 HSPs)
chr8 (275-340)||(217014-217079)
chr8 (275-340)||(693574-693639)
chr8 (275-340)||(697783-697848)
chr8 (275-340)||(730637-730702)
chr8 (275-340)||(854532-854597)


Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 2335982 - 2336372
Alignment:
Q  1 taatgccttccaccattattcccacaacttcatggtttacaccaaaaaggtattgtataactaacatttgtccattttctatttacacctcctatatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335982 taatgccttccaccattattcccacaacttcatggtttacaccaaaaaggtattgtataactaacatttgtccattttctatttacacctcctatatcca 2336081  T
Q  101 tccatgctgggttcattcttctttgcattatt---atagcatgtggggcttttaaccaattttggacatgtaatctatgtttttgtgaaatgttgnnnnn 197  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  2336082 tccatgctgggttcattcttctttgcattattggtatagcatgtggggcttttaaccaattttggacatgtaatctatgtttttgtgaaatgttgttttt 2336181  T
Q  198 nngtcatgttgtttccctcttctgttagtgttgcttatagataatgttgttttttgttttgtaggttacttgctatattttgtgtgattaatttgttaaa 297  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2336182 ttgtcatgttgtttccctcttctgttagtgttgcttatagataatgttgttttttgttttgtaggttacttgctatattttgtgtgattaatttgttaaa 2336281  T
Q  298 ctatttggatcaaggagcaatagctagcaatggtgttaatggaagtacaggaatacagtaagatataatgcaattaacgccttcttctctc 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2336282 ctatttggatcaaggagcaatagctagcaatggtgttaatggaagtacaggaatacagtaagatataatgcaattaacgccttcttttctc 2336372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 154 - 324
Target Start/End: Original strand, 2312995 - 2313155
Alignment:
Q  154 caattttggacatgtaatctatgtttttgtgaaatgttgnnnnnnngtcatgttgtttccctcttctgttagtgttgcttatagataatgttgttttttg 253  Q
    |||||||||||||||||||| |||||||||||| |||||        |  | ||||||||| ||||| ||||||||| |||||    |||||||||||||    
T  2312995 caattttggacatgtaatctttgtttttgtgaagtgttgcc------tttttttgtttcccccttctattagtgttggttata----atgttgttttttg 2313084  T
Q  254 ttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctag 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2313085 ttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatctaggagcaatagctag 2313155  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 2343646 - 2343739
Alignment:
Q  251 ttgttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaagta 344  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  2343646 ttgttttgtaggttacttggtatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagta 2343739  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 2343405 - 2343499
Alignment:
Q  11 caccattattcccacaacttcatggtttacaccaaaaaggtattgtataactaacatttgtccattttctatttacacctcctatatccatccat 105  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| |||  ||||| ||| | ||||||||||||||||||||||||| |||||||    
T  2343405 caccatgattcccacaacttcatggtttacaccaaagaggtattttatttctaacttttctacattttctatttacacctcctatattcatccat 2343499  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 2312825 - 2312889
Alignment:
Q  13 ccattattcccacaacttcatggtttacaccaaaaaggtattgtataactaacatttgtccattt 77  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||    
T  2312825 ccatgattcccacaacttcatggtttacaccaaagatgtattgtataactaaaatttgtacattt 2312889  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 2313595 - 2313633
Alignment:
Q  343 tacaggaatacagtaagatataatgcaattaacgccttc 381  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2313595 tacaggaatacagtaagatataatgcaattaacaccttc 2313633  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 36800292 - 36800204
Alignment:
Q  252 tgttttgtaggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    |||| ||||| ||||| ||||||||||||||||||||  |||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  36800292 tgttgtgtagattactggctatattttgtgtgattaacatgttgaactatttggaccgaggagcaatagctagcaatggtgttaatgga 36800204  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 12969903 - 12969834
Alignment:
Q  272 atattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaa 341  Q
    ||||||||| | || |||||| | || ||| |||||| |||||| |||||||||||||||||||||||||    
T  12969903 atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa 12969834  T

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Target: scaffold1031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 2450 - 2385
Alignment:
Q  275 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  2450 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 2385  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 217014 - 217079
Alignment:
Q  275 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  217014 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 217079  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 693574 - 693639
Alignment:
Q  275 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  693574 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 693639  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 697783 - 697848
Alignment:
Q  275 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  697783 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 697848  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 730637 - 730702
Alignment:
Q  275 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  730637 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 730702  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 854532 - 854597
Alignment:
Q  275 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 340  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  854532 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 854597  T

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