View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_high_6 (Length: 324)
Name: NF10551_high_6
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6609909 - 6609602
Alignment:
| Q |
1 |
gtttcttactccacttgtgtgctctcaactatattacaatttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagct |
100 |
Q |
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| T |
6609909 |
gtttcttactccaaatgtgtgctctcaactctattacaacttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagct |
6609810 |
T |
|
| Q |
101 |
atagctaatgactcaaggattgctgcttctctcttgcgccttcatttccatgattgttttgtcaatgtaattaagtctcttcatttccatgattgtttac |
200 |
Q |
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| T |
6609809 |
atagctaatgactcaaggattgctgcttctctcttgcgccttcatttccatgattgttttgtcaatgtaattaagtctcttcatttccattattttttac |
6609710 |
T |
|
| Q |
201 |
actgtcaattaatataccgttagatcgttaaaattattctttaataatattatgtgttgatttgttatttcatttttgtgttacatagggatgtgatgga |
300 |
Q |
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| T |
6609709 |
actgtcaattaatataccgttggatcgttaaaattattctttaataatattatgtgttgatttgttatttcatttttgtgttacatagggatgtgaagga |
6609610 |
T |
|
| Q |
301 |
tctctgct |
308 |
Q |
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||| |||| |
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| T |
6609609 |
tctgtgct |
6609602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 6602394 - 6602220
Alignment:
| Q |
1 |
gtttcttactccacttgtgtgctctcaactatattacaatttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||||| | ||||||||||||||| |
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| T |
6602394 |
gtttcttactccacttgtgtgctctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagct |
6602295 |
T |
|
| Q |
101 |
atagctaatgactcaaggattgctgcttctctcttgcgccttcatttccatgattgttttgtcaatgtaattaag |
175 |
Q |
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| T |
6602294 |
atagctaatgattctaggattgctgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaag |
6602220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 6602143 - 6602100
Alignment:
| Q |
265 |
ttatttcatttttgtgttacatagggatgtgatggatctctgct |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6602143 |
ttatttcatttttgtgttacatagggatgtgatggatctgtgct |
6602100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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