View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_high_9 (Length: 286)
Name: NF10551_high_9
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 35766668 - 35766399
Alignment:
| Q |
1 |
tcttcagcttcattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatatacatacagaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766668 |
tcttcagcttcattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatatacatacagaca |
35766569 |
T |
|
| Q |
101 |
taaataatcccaaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaagtggtaagaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766568 |
taaataatcccaaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaagtggtaagaataa |
35766469 |
T |
|
| Q |
201 |
ccaagcaaacaaagccatccattgcatgaaccaataagaaaattgcaatccatatcccataatcgataat |
270 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35766468 |
ccaagcaaacaaagccatccattgcatgaaccaataagaaaattgcaatccttatcccataatcgataat |
35766399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 19356978 - 19356937
Alignment:
| Q |
193 |
aagaataaccaagcaaacaaagccatccattgcatgaaccaa |
234 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
19356978 |
aagaataaccaagcaaacaaagcaatccattgcaagaaccaa |
19356937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 29598115 - 29598159
Alignment:
| Q |
190 |
ggtaagaataaccaagcaaacaaagccatccattgcatgaaccaa |
234 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29598115 |
ggtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa |
29598159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 29641856 - 29641813
Alignment:
| Q |
191 |
gtaagaataaccaagcaaacaaagccatccattgcatgaaccaa |
234 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29641856 |
gtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa |
29641813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 29821176 - 29821219
Alignment:
| Q |
191 |
gtaagaataaccaagcaaacaaagccatccattgcatgaaccaa |
234 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
29821176 |
gtaagaataactgagcaaacaaagcaatccattgcatgaaccaa |
29821219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 42297604 - 42297562
Alignment:
| Q |
192 |
taagaataaccaagcaaacaaagccatccattgcatgaaccaa |
234 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
42297604 |
taagaataaccgagcaaacaaatcaatccattgcatgaaccaa |
42297562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 29647174 - 29647133
Alignment:
| Q |
191 |
gtaagaataaccaagcaaacaaagccatccattgcatgaacc |
232 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||| |
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|
| T |
29647174 |
gtaagaataaccgagcaaacaaagcaatctattgcatgaacc |
29647133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 20495249 - 20495172
Alignment:
| Q |
193 |
aagaataaccaagcaaacaaagccatccattgcatgaaccaataagaaaattgcaatccatatcccataatcgataat |
270 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||| | | | || ||| |||||| ||||||||||| |
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| T |
20495249 |
aagaaaaaccaagcaaacaaagccatccattgcaagaaccaataacatattgacactccttatcccttaatcgataat |
20495172 |
T |
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