View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_low_1 (Length: 539)
Name: NF10551_low_1
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 4175775 - 4175269
Alignment:
| Q |
18 |
agaactatgaagcataagttttgtgctatagagagccctgtactgccatgctccacgactacgacaaatctgcagaaacatcagcgcaactcgagagagt |
117 |
Q |
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| T |
4175775 |
agaactatgaagcataagttttgtgctatagagagccctgtactgccatgctccacgactacgacaaatctgcagaaacatcagcgcaactcgagagagt |
4175676 |
T |
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| Q |
118 |
cgggacagaagaaacaacggtcatcagcttacatcccttgcacgaatgtgaagaaagatgtttgatgaatcaagatagtttctttttctttttgatctag |
217 |
Q |
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| T |
4175675 |
cgggacagaagaaacaacggtcatcaccttacatcccttgcacgaatgtgaagaaagatgtttgatgaatcaagatagtttctttttctttttgatctag |
4175576 |
T |
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| Q |
218 |
accctccgtgcagtttgagttgagtcgggtggactcggaagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttat |
317 |
Q |
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| T |
4175575 |
accctccgtgcagtttgagttgagtcgggtggactcggaagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttat |
4175476 |
T |
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| Q |
318 |
ttaaggggaaccaaagtcaatcttgtttgaaccaacaagcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttt |
417 |
Q |
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| T |
4175475 |
ttaaggggaaccaaagtcaatcttgtttgaaccaacaagcgttggttagtcgaactagttctttgattcattcattttacctagtatatactaaatcttt |
4175376 |
T |
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| Q |
418 |
tttgtatgtgtaagtattttatgctaccttcttaagcatgcatttgttgtaatatgtcaattcgtagtaattgtttggta-tgtgttcggtcattgatta |
516 |
Q |
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| T |
4175375 |
tttgtatat-aaagtattttatgctaccttcataagcatgcatttgttgtaatatgacaattcgtagcacttgtttggtattgtgttcagtcattgatta |
4175277 |
T |
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| Q |
517 |
tcgcgtcc |
524 |
Q |
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| T |
4175276 |
tcgcgtcc |
4175269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 256 - 529
Target Start/End: Complemental strand, 4174199 - 4173926
Alignment:
| Q |
256 |
aagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttatttaaggggaaccaaagtcaatcttgtttgaaccaacaa |
355 |
Q |
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| T |
4174199 |
aagatgataaagttctaccaacgctattttttcattcacaagactcgaattcaaaaccttatttaaggagaaccaaagtcaatcttatttgaaccaacaa |
4174100 |
T |
|
| Q |
356 |
gcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagtattttatgctaccttcttaagca |
455 |
Q |
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| T |
4174099 |
gcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagtattttatgctaccttcttaagca |
4174000 |
T |
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| Q |
456 |
tgcatttgttgtaatatgtcaattcgtagtaattgtttggtatgtgttcggtcattgattatcgcgtccctatg |
529 |
Q |
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| T |
4173999 |
tgcatttgttgtaatatgtcaattcgtagtaattgtttggtatgtgttcggtcattgattatcgcgtccctatg |
4173926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 4042843 - 4042907
Alignment:
| Q |
461 |
ttgttgtaatatgtcaattcgtagtaattgtttggt-atgtgttcggtcattgattatcgcgtcc |
524 |
Q |
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| T |
4042843 |
ttgttgtaatatgtcattttgtagcacttgtttggtgttgtgttcagtcattgatcatcgcgtcc |
4042907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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