View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_low_12 (Length: 281)
Name: NF10551_low_12
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 10946236 - 10945981
Alignment:
| Q |
15 |
gttttttggggattgaggtggattgtgaaaattctctgattgaactgaaattgggattgggattgtgttgatggtgatgaatcaattggagattttgttt |
114 |
Q |
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| T |
10946236 |
gttttttggggattgaggtggattgtgaaaattctctgattgaactgaaattgggattgggattgtattgatggtgatgaatcaattggagattttgttt |
10946137 |
T |
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| Q |
115 |
gaagaaatttgagattcgaaaaatgaagactcgcatttttagggttttggggatttagggtttatgtgaaaatttcggctatgaagatgtgaagtgaggt |
214 |
Q |
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| T |
10946136 |
gaagaaatttgagattcgaaaaatgaagactcgcatttttagggttttggggatttagggtttatgtgaaaatttcggctatgaagatgtgaagtgaggt |
10946037 |
T |
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| Q |
215 |
tggacagtagttagaacgtgaaggaagggatgtttggtgaaaggcaaatgcttcat |
270 |
Q |
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| T |
10946036 |
tggacagtagttagaacgggaaggaagggatgtttggtgaaaggcaaatgcttcat |
10945981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 10942729 - 10942971
Alignment:
| Q |
15 |
gttttttggggattgaggtggattgtgaaaattctctgattgaactgaaattgggattgggattgtgttgatggtgatgaatcaattggagattttgttt |
114 |
Q |
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| T |
10942729 |
gttttttggggattgaggtggattgtgaaaattctctgattgaactgaaattgggattgggattgtgttgatggtgaagaatcaattgggggttttgttt |
10942828 |
T |
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| Q |
115 |
gaagaaatttgagattcgaaaaatgaagactcgcatttttagggttttggggatttagggtttatgtgaaaatttcggctat-gaagatgtgaagtgagg |
213 |
Q |
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| T |
10942829 |
gaagaaatttgagattcgaaaaatgaagattcacatttttagggttttggggatatagggtttatgtgaaaatttcggctatggaagatgtgaagtgagg |
10942928 |
T |
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| Q |
214 |
ttggacagtagttagaacgtgaaggaagggatgtttggtgaaa |
256 |
Q |
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| T |
10942929 |
ttggagagtagttagaacgggaaggaaggggtgtttggtgaaa |
10942971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 28433090 - 28432884
Alignment:
| Q |
27 |
ttgaggtggattgtgaaaattctctgattgaactgaaattgggattgggattgtgttgatggtgatgaatcaattggagattttgtttgaagaaatttga |
126 |
Q |
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| T |
28433090 |
ttgaggtggattgtgaaaattctctgattgaattgaaattgggattg------tgttgatggtgatgaatccattggggattttgtttgaagaaatttga |
28432997 |
T |
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| Q |
127 |
gattcgaaaaatgaagactcgcatttttagggttttggggatttagggtttatgtgaaaatttcggctat-gaagatgtgaagtgagg-ttggacagtag |
224 |
Q |
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| T |
28432996 |
gattcgaaaaatgaagattcgcatttttaggg-tttggggatttagggtttgtgtgaagatttcggctatggaagatgtgaagtgaggtttgaagagtag |
28432898 |
T |
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| Q |
225 |
ttagaacgtgaagg |
238 |
Q |
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| T |
28432897 |
ttagaacgggaagg |
28432884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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