View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_low_22 (Length: 227)
Name: NF10551_low_22
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3837651 - 3837436
Alignment:
| Q |
1 |
cggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaaggatctc |
100 |
Q |
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| T |
3837651 |
cggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaaggatctc |
3837552 |
T |
|
| Q |
101 |
caagattttgcatcagatcaacaatcaacaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttttgttgtttccctt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||| |
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| T |
3837551 |
caagattttgcaccagatcaacaatcaacaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaaatttatgttctttctctt |
3837452 |
T |
|
| Q |
201 |
tactttgatatccttt |
216 |
Q |
| |
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| ||||| |||||||| |
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| T |
3837451 |
ttctttgctatccttt |
3837436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 3831390 - 3831170
Alignment:
| Q |
2 |
ggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaagg--atct |
99 |
Q |
| |
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||||||||||||||| || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| |||| ||| |
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| T |
3831390 |
ggttgagttaaacggcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttcaagggtatca |
3831291 |
T |
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| Q |
100 |
ccaagatttt-gcatcagatcaacaatca---acaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttttgttgttt |
195 |
Q |
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|| ||||| ||| |||| |||||| | ||| || |||||| || |||||||| | ||| |||||||| |||||||||||||| |||||||| |
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| T |
3831290 |
agaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacataaaagtttatgttgttt |
3831191 |
T |
|
| Q |
196 |
ccctttactttgatatccttt |
216 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
3831190 |
ccctttactttgctatccttt |
3831170 |
T |
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