View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_low_4 (Length: 399)
Name: NF10551_low_4
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 34290008 - 34289632
Alignment:
| Q |
1 |
aaaataaagggcatgtggcaactattagcttcgataaacttgattgtgtatcactttcaagcattccaaagcttgtgagtatttgttcagattcactatg |
100 |
Q |
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| T |
34290008 |
aaaataaagggcatgtggcaactattagcttcaataaacttgattgtgtatcactttcaagccttccaaagcttgtgagtatttgttcagattcactttg |
34289909 |
T |
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| Q |
101 |
gttagaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaaccaatattgatgcaaagcatgacaacctc |
200 |
Q |
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| T |
34289908 |
gttagaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaaccaatattgatgcaaagcatgacaacctc |
34289809 |
T |
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| Q |
201 |
aataacgcaaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttcaagttggtcctctagaaatgatacctaaatttattcatcaagta |
300 |
Q |
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| T |
34289808 |
aataacgtaaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttcaagttggtcctctagaaatgatacctaaatttattcatcaagta |
34289709 |
T |
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| Q |
301 |
aacccaagtaacaaaaatagtaaggtattttccacaactatactatatatagtctttatatataatactaatagcattatc |
381 |
Q |
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| T |
34289708 |
aacccaagtaataaaaatagtaaggtattttccacaactatac----tatagtctttatatataatactaatagcattatc |
34289632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 34374392 - 34374473
Alignment:
| Q |
64 |
ttccaaagcttgtgagtatttgttcagattcactatggttagaatgtccatccttgaagcaatttgatattgaggattgtcc |
145 |
Q |
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| T |
34374392 |
ttccaaagcttgtgaatatttgttcagattctgttgagttagaatatccatccttgagggaatttaagattgatgattgtcc |
34374473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 15894017 - 15893848
Alignment:
| Q |
3 |
aataaagggcatgtggcaactattagcttcgataaacttgattgtgtatcactttcaagcattccaaagcttgtgagtatttgttcagattcactatggt |
102 |
Q |
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|||||||| |||||| ||||||| | ||| |||||||| || | ||||||||||||| |||||||||||||||||||||||||||| | ||| |||| |
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| T |
15894017 |
aataaaggacatgtgaaaactattggtttcaataaactttgttatttatcactttcaagacttccaaagcttgtgagtatttgttcagaattactttggt |
15893918 |
T |
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| Q |
103 |
tagaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaac |
172 |
Q |
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| T |
15893917 |
tagaatatccatccttgaagcaatttgatgttgtgcattgtcctatgttggagatctctttcttaccaac |
15893848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 15893797 - 15893749
Alignment:
| Q |
208 |
caaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttc |
256 |
Q |
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| T |
15893797 |
caaaagatgttagttttcacagtttaaaagaaaacaattcaaggtcttc |
15893749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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