View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10551_low_9 (Length: 311)
Name: NF10551_low_9
Description: NF10551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10551_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 9423952 - 9423671
Alignment:
| Q |
19 |
cgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgagttatgttggaaatttttccacaggaagaagaacaaggttgtgaata |
118 |
Q |
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| T |
9423952 |
cgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaata |
9423853 |
T |
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| Q |
119 |
agttttgtgtggaagtagaaacaagtaaagaaacattatcacacatcttgcataactggtttttcgtccaaaaatagaggttgaaaccattttcacttaa |
218 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9423852 |
agttttgtgtggaagtagaaacaagtaaagaaaaactatcacacatcttgcataactggtttttcgtccaaaaatagaggttgaaaccattttcacttaa |
9423753 |
T |
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| Q |
219 |
ggtgctagttttgttttggtgctggagtatagtatagttttaaaggatttacatggaaaaacttattatgtaactttcctat |
300 |
Q |
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| T |
9423752 |
ggtgctagttttgttttggtgctggagtatagtatagttttaaaggatttacatggaaaaacttattatgtaactttcctat |
9423671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 9418102 - 9418317
Alignment:
| Q |
85 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagtaaagaaacattatcacacatcttgcataactggtttttcg |
184 |
Q |
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| T |
9418102 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagtaaagaaatactatcacacatcttgcataactggtttttcg |
9418201 |
T |
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| Q |
185 |
tccaaaaatagaggttgaaaccattttcacttaaggtgctagttttgttttggtgctggagtatagtatagttttaaaggatttacatggaaaaacttat |
284 |
Q |
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| T |
9418202 |
tccaaaaatagtggttgaaaccattttcacttaaggtgctagttttgttttggtgctggagtatagtatagttttaaaggatttacatggaaaaacttat |
9418301 |
T |
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| Q |
285 |
tatgtaactttcctat |
300 |
Q |
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| T |
9418302 |
tatgtaactttcctat |
9418317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 9444185 - 9443973
Alignment:
| Q |
19 |
cgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgagttatgttggaaatttttccacaggaagaagaacaaggttgtgaata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444185 |
cgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggataagttatgttggaaatttttccacaggaagaagaacaaggttgtgaata |
9444086 |
T |
|
| Q |
119 |
agttttgtgtggaagtagaaacaagtaaagaaacattatcacacatcttgcataactggtttttcgtccaaaaatagaggttgaaaccattttcacttaa |
218 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||| |||| |||||| ||||||||||||||||||||||| | |
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| T |
9444085 |
agttttgtgtggaagtagaaacaagtaaagaaatactatcacacctcttgcatatctggcttttactccaaagttagaggttgaaaccattttcactcac |
9443986 |
T |
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| Q |
219 |
ggtgctagttttg |
231 |
Q |
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| T |
9443985 |
tgtgctagttttg |
9443973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 9418068 - 9418105
Alignment:
| Q |
19 |
cgtacaaattgttgccacagtggtctgggtcgtgtttt |
56 |
Q |
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| T |
9418068 |
cgtacaaattgttgccacagtggtctgggtcgtgtttt |
9418105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 9093297 - 9093247
Alignment:
| Q |
44 |
tgggtcgtgttttagtcggaatggatgagttatgttggaaatttttccaca |
94 |
Q |
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| T |
9093297 |
tgggtcattttttagtcgaaatggataagttatgttggaaattttgccaca |
9093247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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