View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10552_low_1 (Length: 391)
Name: NF10552_low_1
Description: NF10552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10552_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 49979051 - 49978671
Alignment:
| Q |
1 |
tctctctctggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcg |
100 |
Q |
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| T |
49979051 |
tctctctctggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcg |
49978952 |
T |
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| Q |
101 |
ttgaaggatgatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttact |
200 |
Q |
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| T |
49978951 |
ttgaaggatgatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttact |
49978852 |
T |
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| Q |
201 |
catcatatgactcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagat |
300 |
Q |
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| T |
49978851 |
catcatatgactcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagat |
49978752 |
T |
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| Q |
301 |
gttgaggatgatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatctcctatg |
381 |
Q |
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| T |
49978751 |
gttgaggatgatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatctcctatg |
49978671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
120 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
176 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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