View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10552_low_4 (Length: 241)
Name: NF10552_low_4
Description: NF10552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10552_low_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 49446020 - 49446243
Alignment:
| Q |
18 |
aatagaatcctcagatctgaaacctatatgatgtgcttgtaattcttcaagaattggacatccagccaaaagcaacatgaaatcttgaatattaaaaaac |
117 |
Q |
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| T |
49446020 |
aatagaatcctcagatctgaaacctatatgatgtgcttgtaattcttcaagaattggacatccagtcaaaagcaacatgaaatcttgaatattaaaaaac |
49446119 |
T |
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| Q |
118 |
ccagattcgctgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgc |
217 |
Q |
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| T |
49446120 |
ccagattcgctgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgc |
49446219 |
T |
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| Q |
218 |
agctgagaatgctaataggcaatt |
241 |
Q |
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| T |
49446220 |
agctgagaatgctaataggcaatt |
49446243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 17642084 - 17642191
Alignment:
| Q |
134 |
gaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaatgctaat |
233 |
Q |
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| T |
17642084 |
gaaggattttgagggagaggagtctaaagaaagaaaaccccttcacagcgaacccataaaactcgagaacaacaagagtcctgcaggttagaatgctaac |
17642183 |
T |
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| Q |
234 |
aggcaatt |
241 |
Q |
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| T |
17642184 |
aagcaatt |
17642191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 49434690 - 49434727
Alignment:
| Q |
55 |
tgtaattcttcaagaattggacatccagccaaaagcaa |
92 |
Q |
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| T |
49434690 |
tgtaaatcttctagaattggacatccagccaaaagcaa |
49434727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 49438539 - 49438572
Alignment:
| Q |
61 |
tcttcaagaattggacatccagccaaaagcaaca |
94 |
Q |
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| T |
49438539 |
tcttcaagaattggacatccagccagaagcaaca |
49438572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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