View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_high_10 (Length: 240)
Name: NF10553_high_10
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 24544690 - 24544492
Alignment:
| Q |
18 |
gtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaataatgannnnnnnnngctt |
117 |
Q |
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| T |
24544690 |
gtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaataatgattttttttc-ctt |
24544592 |
T |
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| Q |
118 |
atatacactgagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatggtaatattttaatgggttgaaatataaataaagttttca |
217 |
Q |
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| T |
24544591 |
atatacactgagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatgataatattttaatgggttgaaatataaataaagttttca |
24544492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 24557741 - 24557937
Alignment:
| Q |
18 |
gtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaataatgannnnnnnnngctt |
117 |
Q |
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| T |
24557741 |
gtatttcctaaagaaacaatattaataatataagaggattcattaagcaacaatccagatatgcagaacagaacagtgcaataatgattttttc---ctt |
24557837 |
T |
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| Q |
118 |
atatacactgagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatggtaatattttaatgggttgaaatataaataaagttttca |
217 |
Q |
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| T |
24557838 |
atatacactaagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatgataatattttaatgggttgaaatataaataaagttttca |
24557937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 24554680 - 24554879
Alignment:
| Q |
18 |
gtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaataatgannnnnnnnngctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
24554680 |
gtatttcctaaagaaacaatattaataatataagaggattcattaagcaacaatccagatatgcagaacagaatagtgcaataatgattttttttc-ctt |
24554778 |
T |
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| Q |
118 |
atatacactgagcataagaagaaacgtgagagggaagagatattaagata-ggggtaaaatggtaatattttaatgggttgaaatataaataaagttttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24554779 |
atatacactgagcataagaagaaacgtgagagggaagagatattaagatagggggtaaaatgataatattttaatgggttgaaatataaataaagttttc |
24554878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 24551722 - 24551800
Alignment:
| Q |
139 |
aaacgtgagagggaagagatattaagataggggtaaaatggtaatattttaatgggttgaaatataaataaagttttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
24551722 |
aaacgtgagagggaagagatattaagataggggtaaaatgataatattttaatgggatgaaatataaataaagttttca |
24551800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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