View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10553_high_12 (Length: 233)

Name: NF10553_high_12
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10553_high_12
NF10553_high_12
[»] chr6 (10 HSPs)
chr6 (1-233)||(24631880-24632112)
chr6 (130-233)||(33385528-33385631)
chr6 (1-146)||(33259632-33259777)
chr6 (1-146)||(33416201-33416346)
chr6 (143-224)||(31564670-31564751)
chr6 (1-63)||(33385363-33385425)
chr6 (130-233)||(33259817-33259920)
chr6 (1-47)||(9165232-9165278)
chr6 (159-224)||(2455840-2455903)
chr6 (68-127)||(14340931-14340991)
[»] chr5 (3 HSPs)
chr5 (143-192)||(30653383-30653432)
chr5 (68-133)||(3951500-3951565)
chr5 (109-146)||(6734001-6734038)
[»] scaffold0428 (1 HSPs)
scaffold0428 (130-228)||(3905-4003)
[»] chr2 (6 HSPs)
chr2 (68-127)||(33197367-33197427)
chr2 (143-228)||(32821823-32821906)
chr2 (156-232)||(1160641-1160714)
chr2 (157-228)||(11063516-11063585)
chr2 (68-139)||(42974234-42974306)
chr2 (159-187)||(43259864-43259892)
[»] chr3 (2 HSPs)
chr3 (159-228)||(43115086-43115153)
chr3 (188-231)||(32703182-32703225)
[»] chr1 (2 HSPs)
chr1 (159-222)||(19412576-19412637)
chr1 (106-146)||(870966-871006)
[»] chr8 (5 HSPs)
chr8 (68-146)||(7026613-7026692)
chr8 (159-232)||(13000393-13000464)
chr8 (68-128)||(5383041-5383102)
chr8 (68-128)||(27754560-27754621)
chr8 (102-146)||(14247341-14247385)
[»] chr4 (2 HSPs)
chr4 (159-189)||(21157798-21157828)
chr4 (159-187)||(51197494-51197522)
[»] scaffold0590 (1 HSPs)
scaffold0590 (71-139)||(1190-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (71-139)||(2716-2785)
[»] chr7 (4 HSPs)
chr7 (166-222)||(5939122-5939176)
chr7 (101-146)||(45078209-45078254)
chr7 (159-187)||(15075097-15075125)
chr7 (151-187)||(26935569-26935605)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 24632112 - 24631880
Alignment:
Q  1 atttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagttggaaaactaagacctcgtttggataagcaacttaattaaatattataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632112 atttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagttggaaaactaagacctcgtttggataagcaacttaattaaatattataag 24632013  T
Q  101 ataaacgcttatcatataagtgcttatgcataatctattgttataagcttttctaaacagcttatggaaataagctaaaaacagcttttatgggcatatc 200  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  24632012 ataaacgcttatcatataagtgcttatgcataagctatggttataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatc 24631913  T
Q  201 atgagttgtttccataaactcttccaaatagtt 233  Q
    |||||||||||||||||||||||||||||||||    
T  24631912 atgagttgtttccataaactcttccaaatagtt 24631880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 33385528 - 33385631
Alignment:
Q  130 ataatctattgttataagcttttctaaacagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaat 229  Q
    |||| ||||| | ||||||||||||| |||| ||||||||| ||||| |||||| ||||||||| ||| ||||||| ||||||||||||||||||||||     
T  33385528 ataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcatgagctgtttccataaactcttccaaac 33385627  T
Q  230 agtt 233  Q
    ||||    
T  33385628 agtt 33385631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 33259632 - 33259777
Alignment:
Q  1 atttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagttggaaaactaagacctcgtttggataagcaacttaattaaatattataag 100  Q
    ||||||||| || |||||||||||| ||||||||||||  || |  | | |||||| ||||||||| |||||||||| || | ||||| ||  |||||||    
T  33259632 atttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggctggaaacctaagaccttgtttggataaacagcctaattcaagcttataag 33259731  T
Q  101 ataaacgcttatcatataagtgcttatgcataatctattgttataa 146  Q
    ||||  ||||  |||||||||||||||| |||| ||||| ||||||    
T  33259732 ataagagctttacatataagtgcttatgtataagctatttttataa 33259777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 33416201 - 33416346
Alignment:
Q  1 atttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagttggaaaactaagacctcgtttggataagcaacttaattaaatattataag 100  Q
    ||||||||||||||| |||||  ||  ||||||||||| ||||||||   | |||||| | ||||| |||||||||| |||| ||||||||  |||||||    
T  33416201 atttaacaattagaagtcttaactaaaaattcaaagataggtgaacagactagaaaaccatgaccttgtttggataaacaacctaattaaagcttataag 33416300  T
Q  101 ataaacgcttatcatataagtgcttatgcataatctattgttataa 146  Q
    |||| |||| || ||  ||||||||||| |||| ||||| ||||||    
T  33416301 ataagcgctcattatcaaagtgcttatgtataagctatttttataa 33416346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 31564751 - 31564670
Alignment:
Q  143 ataagcttttctaaacagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttc 224  Q
    ||||||||||||| ||| | |||||||||||||| |||||| ||||| ||| ||| |||| |||||||||||| ||||||||    
T  31564751 ataagcttttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttc 31564670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33385363 - 33385425
Alignment:
Q  1 atttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagttggaaaactaaga 63  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||| | |||||| ||||||    
T  33385363 atttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggctggaaacctaaga 33385425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 33259817 - 33259920
Alignment:
Q  130 ataatctattgttataagcttttctaaacagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaat 229  Q
    |||| ||||| | ||||||||||||| ||||  |||| |||   ||| |||||||||||||||| ||| |||| ||  |||||||||||||||||||||     
T  33259817 ataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggacatgtcattagccgtttccataaactcttccaaac 33259916  T
Q  230 agtt 233  Q
    ||||    
T  33259917 agtt 33259920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9165232 - 9165278
Alignment:
Q  1 atttaacaattagaaatcttatgtaggaattcaaagattggtgaaca 47  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||    
T  9165232 atttaacaattagaaatcttatgtaaaaattcaaagataggtgaaca 9165278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 2455840 - 2455903
Alignment:
Q  159 agcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttc 224  Q
    |||||||||||||||| | |||| ||  ||||||||||| |||| |||||||||||||| ||||||    
T  2455840 agcttatggaaataagttgaaaatag--tttatgggcatgtcataagttgtttccataagctcttc 2455903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 14340991 - 14340931
Alignment:
Q  68 gtttggataagcaacttaattaaata-ttataagataaacgcttatcatataagtgcttat 127  Q
    |||||||||| |||||||||||| |  |||||| |||||| ||||||||||||||| ||||    
T  14340991 gtttggataaacaacttaattaagtgcttataacataaacacttatcatataagtgtttat 14340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 30653432 - 30653383
Alignment:
Q  143 ataagcttttctaaacagcttatggaaataagctaaaaacagcttttatg 192  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  30653432 ataagcttttctagacagcttatggaaataagctgaaaacagcttttatg 30653383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 3951500 - 3951565
Alignment:
Q  68 gtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataa 133  Q
    ||||||||||  |||||||||||   |||||  ||||| |||||||||||||||||||||| ||||    
T  3951500 gtttggataaataacttaattaagcgttatagcataaatgcttatcatataagtgcttatgtataa 3951565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 6734038 - 6734001
Alignment:
Q  109 ttatcatataagtgcttatgcataatctattgttataa 146  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  6734038 ttatcatataagtgtttatgcataatctatttttataa 6734001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 3905 - 4003
Alignment:
Q  130 ataatctattgttataagcttttctaaacagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaa 228  Q
    |||| ||||| | ||||||||||||| ||||  |||| |||   ||| |||||||||||||||| ||| |||||||  |||||||||||||||||||||    
T  3905 ataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttccaaa 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 33197427 - 33197367
Alignment:
Q  68 gtttggataagcaacttaattaaata-ttataagataaacgcttatcatataagtgcttat 127  Q
    |||||||||| ||||| ||||||| | |||||| |||||||||||||||||||||||||||    
T  33197427 gtttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttat 33197367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 32821823 - 32821906
Alignment:
Q  143 ataagcttttctaaacagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaa 228  Q
    ||||||| | ||||| ||||||| ||||||| || ||||||||||  |||| ||| |||| ||||||||| |||||||||||||||    
T  32821823 ataagctatcctaaagagcttatagaaataaactgaaaacagctt--atggacatgtcataagttgtttctataaactcttccaaa 32821906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 1160714 - 1160641
Alignment:
Q  156 aacagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaatagt 232  Q
    |||||||||||||||||| ||||||||| |  |||||| ||| ||||  |||||||||||||| ||| |||||||||    
T  1160714 aacagcttatggaaataaactaaaaacaac--ttatggacatgtcataggttgtttccataaa-tctaccaaatagt 1160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 11063516 - 11063585
Alignment:
Q  157 acagcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaa 228  Q
    |||||||||| |||||||||||||||| |  |||||| ||| |||| |  ||||||||||| ||||||||||    
T  11063516 acagcttatgaaaataagctaaaaacaac--ttatggacatgtcataatatgtttccataagctcttccaaa 11063585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 42974234 - 42974306
Alignment:
Q  68 gtttggataagcaacttaattaa-atattataagataaacgcttatcatataagtgcttatgcataatctatt 139  Q
    ||||||||||||||||||||||| |  |||||  |||||| |||||||||| ||||||| || |||| |||||    
T  42974234 gtttggataagcaacttaattaagagcttatagcataaacacttatcatattagtgcttgtgtataaactatt 42974306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 43259864 - 43259892
Alignment:
Q  159 agcttatggaaataagctaaaaacagctt 187  Q
    |||||||||||||||||||||||||||||    
T  43259864 agcttatggaaataagctaaaaacagctt 43259892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 43115086 - 43115153
Alignment:
Q  159 agcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaa 228  Q
    |||||||||||||||||| ||||||  ||  |||| ||| |||| |||||||||||||||||||||||||    
T  43115086 agcttatggaaataagctgaaaacaagtt--atggacatgtcataagttgtttccataaactcttccaaa 43115153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 32703182 - 32703225
Alignment:
Q  188 ttatgggcatatcatgagttgtttccataaactcttccaaatag 231  Q
    ||||||||||||||| || ||||||||||| |||||||||||||    
T  32703182 ttatgggcatatcataaggtgtttccataagctcttccaaatag 32703225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 19412637 - 19412576
Alignment:
Q  159 agcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactct 222  Q
    ||||||||||||||||| |||| ||||||  |||| ||| |||| |||||||||||||||||||    
T  19412637 agcttatggaaataagccaaaatcagctt--atggacatgtcataagttgtttccataaactct 19412576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 870966 - 871006
Alignment:
Q  106 cgcttatcatataagtgcttatgcataatctattgttataa 146  Q
    ||||||||||||||||||||||| |||| ||||| ||||||    
T  870966 cgcttatcatataagtgcttatgtataaactatttttataa 871006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 7026613 - 7026692
Alignment:
Q  68 gtttggataagcaacttaattaaatattataag-ataaacgcttatcatataagtgcttatgcataatctattgttataa 146  Q
    |||||||||| ||||||||||||  |||   || ||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  7026613 gtttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgcttatgcataagctactgttataa 7026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 13000464 - 13000393
Alignment:
Q  159 agcttatggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactcttccaaatagt 232  Q
    |||||||||||||||||| |||||| ||| |  || ||| |||| ||||||| |||||||||||| ||||||||    
T  13000464 agcttatggaaataagctgaaaacaacttgt--ggacatgtcataagttgttaccataaactcttgcaaatagt 13000393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 5383041 - 5383102
Alignment:
Q  68 gtttggataagcaacttaattaaata-ttataagataaacgcttatcatataagtgcttatg 128  Q
    |||||||||| || |||||||||||| |||||| | |||| ||||||||||||||| |||||    
T  5383041 gtttggataaacagcttaattaaatacttataacaaaaacacttatcatataagtgtttatg 5383102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 27754621 - 27754560
Alignment:
Q  68 gtttggataagcaacttaattaaatatt-ataagataaacgcttatcatataagtgcttatg 128  Q
    |||||| |||||||||||||||| | || |||  ||||||||||||||| ||||||||||||    
T  27754621 gtttgggtaagcaacttaattaagtgtttatagtataaacgcttatcatttaagtgcttatg 27754560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 14247385 - 14247341
Alignment:
Q  102 taaacgcttatcatataagtgcttatgcataatctattgttataa 146  Q
    ||||||||||||||||||||||||||| |||| || || ||||||    
T  14247385 taaacgcttatcatataagtgcttatgtataaactgtttttataa 14247341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 21157798 - 21157828
Alignment:
Q  159 agcttatggaaataagctaaaaacagctttt 189  Q
    |||||||||||||||||||||||||||||||    
T  21157798 agcttatggaaataagctaaaaacagctttt 21157828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 51197522 - 51197494
Alignment:
Q  159 agcttatggaaataagctaaaaacagctt 187  Q
    |||||||||||||||||||||||||||||    
T  51197522 agcttatggaaataagctaaaaacagctt 51197494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 1259 - 1190
Alignment:
Q  71 tggataagcaacttaattaaata-ttataagataaacgcttatcatataagtgcttatgcataatctatt 139  Q
    ||||||| |||||||||||| || |||||  |||||||  ||||||||||||||||||| |||| |||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatt 1190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 2716 - 2785
Alignment:
Q  71 tggataagcaacttaattaaata-ttataagataaacgcttatcatataagtgcttatgcataatctatt 139  Q
    ||||||| |||||||||||| || |||||  |||||||  ||||||||||||||||||| |||| |||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatt 2785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 5939122 - 5939176
Alignment:
Q  166 ggaaataagctaaaaacagcttttatgggcatatcatgagttgtttccataaactct 222  Q
    |||||||||||||||| ||  ||||||| |||||||| |||||||||||||| ||||    
T  5939122 ggaaataagctaaaaaaag--tttatggacatatcatcagttgtttccataagctct 5939176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 45078209 - 45078254
Alignment:
Q  101 ataaacgcttatcatataagtgcttatgcataatctattgttataa 146  Q
    ||||||| |||||||||||||||||||| |||| ||||| ||||||    
T  45078209 ataaacgtttatcatataagtgcttatgtataagctatttttataa 45078254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 15075125 - 15075097
Alignment:
Q  159 agcttatggaaataagctaaaaacagctt 187  Q
    |||||||||||||||||||||||||||||    
T  15075125 agcttatggaaataagctaaaaacagctt 15075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 26935605 - 26935569
Alignment:
Q  151 ttctaaacagcttatggaaataagctaaaaacagctt 187  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  26935605 ttctaaagagcttatggaaataagctgaaaacagctt 26935569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University