View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_high_2 (Length: 354)
Name: NF10553_high_2
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 53310996 - 53311314
Alignment:
| Q |
1 |
tgaaatcaatcattcatttctctcttattccctcttttggtatgctttgtttgaatattttaaaacaactgacccagagtagaatgaaatgtaattatca |
100 |
Q |
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| T |
53310996 |
tgaaatcaatcattcatttctctcttactccctcttttggtatgctttgtttgaat-----------------ccagagtagaatgaaatgtaattatca |
53311078 |
T |
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| Q |
101 |
ctctattttttggataggaaaatgcttaccataacaacaaatagtatcacgatcgaggagattacatacaatagaatcaatagcactgcacacttgaaag |
200 |
Q |
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| T |
53311079 |
ctctattttttggacaggaaaatgcttaccataacaacaaatagtatcacga----ggagattacatacaatagaatcaatagcactgcacacttgaaag |
53311174 |
T |
|
| Q |
201 |
tttgaccttaataacacccattacctccttcttttccagccataacaggttttaattggtgcaaattcatgagaaattcgggataaaacaaacacctcgc |
300 |
Q |
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| T |
53311175 |
tttgaccttaataacacccattacctccttcttttccggccataacaggttttaattggtacaaattcatgagagattcgggata----aaacacctcgc |
53311270 |
T |
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| Q |
301 |
agctttatattctatgatagagtgaaataaagttcacattctct |
344 |
Q |
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| T |
53311271 |
agctttatattctatgatagagtgaaataaagttcacattctct |
53311314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 9009628 - 9009701
Alignment:
| Q |
187 |
tgcacacttgaaagtttgaccttaataacacccattacctccttcttttccagccataacaggttttaattggt |
260 |
Q |
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| T |
9009628 |
tgcacacttgaaagtttgaccataataacacccacaacctccttgttttccggccataacaagttttacttggt |
9009701 |
T |
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