View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_high_3 (Length: 331)
Name: NF10553_high_3
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 8258800 - 8258558
Alignment:
| Q |
23 |
catacccatcatagtttatctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctcatcaataatattatgtca |
122 |
Q |
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| T |
8258800 |
catacccatcatagtttatctatttatccataattcaagcttcattgattttaggattactagcaacgtcttcatttgtctcatcaataatattatgtca |
8258701 |
T |
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| Q |
123 |
agtgtattttctcatatac--tattgaatcgtcacatatatttccaacttttcgatatatttctcgtcttttgtgacaatggaggttctaaagacatagt |
220 |
Q |
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| T |
8258700 |
agtgtatttcatcatatactatattgaatcatgtcatatatttccaacttttcaatatatttctcgtcttttgtgacaatggaggttctaaagacatagt |
8258601 |
T |
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| Q |
221 |
aatgcaatctcgtt-aaaaaattcttcaatatgcaactctaat |
262 |
Q |
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| T |
8258600 |
catgcaatttcgttaaaaaaattcttcaatatgcaactctaat |
8258558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 8258536 - 8258496
Alignment:
| Q |
263 |
aatgtgataaattgatgattgtgaattgattattaaatgaa |
303 |
Q |
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| T |
8258536 |
aatgtgataaattgatgattgtgaattgattattaaatgaa |
8258496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 13266875 - 13266789
Alignment:
| Q |
41 |
tctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctcatcaataatattatgtcaagtgt |
127 |
Q |
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| T |
13266875 |
tctatttatgcacaatccaagcttccttaattttaaaattactagccacatgtccatttatctcgactataaaattacgtcaagtgt |
13266789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 32471261 - 32471366
Alignment:
| Q |
41 |
tctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctc-atcaataatattatgtcaagtgtattttctcatat |
139 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| |||| | |||| | |||||| ||| | ||||||||||||| |||| |||||| ||||||| |
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| T |
32471261 |
tctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatat |
32471360 |
T |
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| Q |
140 |
actatt |
145 |
Q |
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||||| |
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| T |
32471361 |
tctatt |
32471366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 29292189 - 29292236
Alignment:
| Q |
265 |
tgtgataaattgatgattgtgaattgattattaaatgaaaggtaaaat |
312 |
Q |
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| T |
29292189 |
tgtgataaattgataattgtgaattgattattaagtgaaaggtaaaat |
29292236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 11364481 - 11364530
Alignment:
| Q |
263 |
aatgtgataaattgatgattgtgaattgattattaaatgaaaggtaaaat |
312 |
Q |
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| T |
11364481 |
aatgtgataaattgataattgtaaattgtttattaaatcaaaggtaaaat |
11364530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 6919437 - 6919337
Alignment:
| Q |
45 |
tttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctc-atcaataatattatgtcaagtgtattttctcatatacta |
143 |
Q |
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|||||||||||| ||| ||||||| ||||||| || |||||| |||| | |||||| ||| | |||| || ||||| ||||||||||||| ||||| ||| |
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| T |
6919437 |
tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta |
6919338 |
T |
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| Q |
144 |
t |
144 |
Q |
| |
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| |
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|
| T |
6919337 |
t |
6919337 |
T |
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