View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_high_6 (Length: 272)
Name: NF10553_high_6
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_high_6 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 33692808 - 33693043
Alignment:
| Q |
37 |
cccaatgggactttttccaaatccagaaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttga |
136 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33692808 |
cccaatgggagtttttccaaatccaggaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttga |
33692907 |
T |
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| Q |
137 |
atggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaccgcggggctgttgctgcagctgaactcatagt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33692908 |
atggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaacgcggggctgttgctgcagctgaactcatagt |
33693007 |
T |
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| Q |
237 |
cgtggggagagacaaaggaggcggacgagtggtggc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33693008 |
cgtggggagagacaaaggaggcggacgagtggtggc |
33693043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 33663791 - 33664026
Alignment:
| Q |
37 |
cccaatgggactttttccaaatccagaaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttga |
136 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||| |||||||||||| |
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| T |
33663791 |
cccaatgggactttttccaaatccaggaaatgtcactaaaggagaaggagaagaaaaagaagaagaatcaacatcattaagaatttctagaaccttttga |
33663890 |
T |
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| Q |
137 |
atggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaccgcggggctgttgctgcagctgaactcatagt |
236 |
Q |
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| T |
33663891 |
atggtggaaacatcgttgtggtggcggccgcggtgatagttattatttttgttgtggaatttaatggcggcggggctgttgctgcagctgaactcgtagt |
33663990 |
T |
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| Q |
237 |
cgtggggagagacaaaggaggcggacgagtggtggc |
272 |
Q |
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| T |
33663991 |
cgtggggagagacgaaggaggcagtcgagtggtggc |
33664026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 33674394 - 33674626
Alignment:
| Q |
37 |
cccaatgggactttttccaaatccagaaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttga |
136 |
Q |
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|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |
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| T |
33674394 |
cccaatgggactctttccaaatccaggaaatgccactaaaggagaaggagaagaaaa---agtagcatcaacatcattgaggatttctagaaccttttgc |
33674490 |
T |
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| Q |
137 |
atggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaccgcggggctgttgctgcagctgaactcatagt |
236 |
Q |
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|||||||||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |||| |
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| T |
33674491 |
atggtggaaacatcgttgtggtggcagctatggcggtggtttttatttttgttgtggaatttaatgacggcagggttgttgctgcagctgaactcgtagt |
33674590 |
T |
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| Q |
237 |
cgtggggagagacaaaggaggcggacgagtggtggc |
272 |
Q |
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||||||| ||||| ||||||| ||||||||||||| |
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| T |
33674591 |
cgtggggtgagacgaaggaggaagacgagtggtggc |
33674626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 33685581 - 33685816
Alignment:
| Q |
37 |
cccaatgggactttttccaaatccagaaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttga |
136 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
33685581 |
cccaatgggactttttccaaaaccaggaaatgccactaaaggagaaggagaagaaaaagaagaaacatcaatatcattgaggatttctagaaccttttga |
33685680 |
T |
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| Q |
137 |
atggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaccgcggggctgttgctgcagctgaactcatagt |
236 |
Q |
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||||| |||||||||||| ||||||| || |||| | ||| ||||||||| |||||||||||||| | | |||||||||||||||||||||||| |||| |
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| T |
33685681 |
atggttgaaacatcgttgtggtggcggccgcggtgatagttattatttttgctgtggaatttaatggcagtggggctgttgctgcagctgaactcgtagt |
33685780 |
T |
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| Q |
237 |
cgtggggagagacaaaggaggcggacgagtggtggc |
272 |
Q |
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||||||||||||| |||||||| | ||||||||||| |
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| T |
33685781 |
cgtggggagagacgaaggaggcagtcgagtggtggc |
33685816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 86969 - 86735
Alignment:
| Q |
38 |
ccaatgggactttttccaaatccagaaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaa |
137 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
86969 |
ccaatgggactttttccaaatccaggaaatgtcactaaaggagaaggagaagaaaaaaaagaagcatcaacttcattaaggatttctagaaccttttgaa |
86870 |
T |
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| Q |
138 |
tggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaccgcggggctgttgctgcagctgaactcatagtc |
237 |
Q |
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||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
86869 |
tggtggaaacatcgttgtggtggcggccatgatggtggtttttatttttgttatggaatttaatgacggcggggctgttgctgcagctgaactcgtagtc |
86770 |
T |
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| Q |
238 |
gtggggagagacaaaggaggcggacgagtggtggc |
272 |
Q |
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|| ||||||||| |||||||||||||||||||||| |
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| T |
86769 |
gttgggagagacgaaggaggcggacgagtggtggc |
86735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 103638 - 103404
Alignment:
| Q |
38 |
ccaatgggactttttccaaatccagaaaatgtcactaaaggagaaggagaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaa |
137 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||| | ||||||||||| |
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| T |
103638 |
ccaacgggactttttccaaacccaggaaatgtcactaaaggagaaggagaagagaaagaagaagcatcaactttattgagaatttctaaaaccttttgaa |
103539 |
T |
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| Q |
138 |
tggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaatttaatgaccgcggggctgttgctgcagctgaactcatagtc |
237 |
Q |
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||||||||||||| | | |||||| || |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
103538 |
tggtggaaacatcatcgtggtggcagccgcggtgatggtttttatttttgttaaggaatttaatgacggcggggctgttgctgcagctgaactcgtagtc |
103439 |
T |
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| Q |
238 |
gtggggagagacaaaggaggcggacgagtggtggc |
272 |
Q |
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|| |||||||| ||||||||| || |||||||| |
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| T |
103438 |
gttgggagagatgaaggaggcgaacaggtggtggc |
103404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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