View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10553_high_8 (Length: 252)

Name: NF10553_high_8
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10553_high_8
NF10553_high_8
[»] chr6 (2 HSPs)
chr6 (1-236)||(24631514-24631749)
chr6 (1-204)||(1943178-1943380)
[»] chr8 (2 HSPs)
chr8 (1-236)||(6223929-6224166)
chr8 (1-95)||(17633868-17633964)
[»] chr4 (3 HSPs)
chr4 (1-236)||(37744346-37744584)
chr4 (17-192)||(24558340-24558517)
chr4 (1-156)||(37750335-37750492)
[»] chr7 (4 HSPs)
chr7 (1-233)||(26607841-26608074)
chr7 (1-233)||(26618407-26618641)
chr7 (1-236)||(26620376-26620605)
chr7 (42-202)||(8248672-8248829)
[»] chr3 (1 HSPs)
chr3 (1-229)||(25338415-25338645)
[»] chr2 (4 HSPs)
chr2 (1-194)||(27150555-27150750)
chr2 (1-195)||(7703042-7703235)
chr2 (42-206)||(24479798-24479962)
chr2 (43-135)||(40016936-40017030)
[»] chr5 (1 HSPs)
chr5 (17-200)||(31571498-31571682)
[»] chr1 (4 HSPs)
chr1 (1-194)||(39367443-39367637)
chr1 (1-173)||(18308796-18308970)
chr1 (112-163)||(17113615-17113666)
chr1 (42-75)||(17113569-17113602)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-206)||(445570-445777)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 24631749 - 24631514
Alignment:
Q  1 ctagctgcaagtatttaaggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaaca--atcactaaaaatct 98  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  24631749 ctagctgcaagtatttaaggaatgtgaggaca--aacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacacaatcactaaaaatct 24631652  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24631651 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggat 24631552  T
Q  199 ctgatatttctctattccatgaaagtaaaaccaatcct 236  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24631551 ctgatatttctctattccatgaaagtaaaaccaatcct 24631514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1943178 - 1943380
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcac--taaaaat 96  Q
    ||||| |||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||  | ||||||   |||||     
T  1943178 ctagccgcaagtatttagaaggaatgtgagaacacaaacaaaataaaagtaaatttgaggtataagtgattgaaccaaatctgataatcacaaaaaaaaa 1943277  T
Q  97 ctgagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaagg 196  Q
     |||||||||||||||||||||||||||||||| ||||     || |||| |||||||  ||||||||| ||||||| | ||||||| || |||| ||||    
T  1943278 ttgagatataaagatggagcagaatttaccttttctaa-----aaacaagcaacaaaagtctattgatttaagtgttactactttctaaacagagtaagg 1943372  T
Q  197 atctgata 204  Q
    ||||||||    
T  1943373 atctgata 1943380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6223929 - 6224166
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||||||  |||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  6223929 ctagctgcaagtatttagaaggaatatgggaacaaaaacaaaataaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaaatt 6224028  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||| |||| ||||||| |||    
T  6224029 gagatataaagatggagcagaatttacctttactaaagatgaagcaagcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagat 6224128  T
Q  199 ctgatatttctctattccatgaaagtaaaaccaatcct 236  Q
    |  | |||  | ||||||||||||||||||||||||||    
T  6224129 cccacattgttatattccatgaaagtaaaaccaatcct 6224166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17633964 - 17633868
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaa 95  Q
    |||||||||||||||||  ||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  17633964 ctagctgcaagtatttagaaggaatgtgagaacaaaaacaaagtaaaagtaaattttaggtataaatgattgaaccaaatccaataatcactaaaaa 17633868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37744584 - 37744346
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  37744584 ctaggtgcaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaatgattgaacccaatccaacaatcactaaaaaaat 37744485  T
Q  99 -gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaagga 197  Q
     |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||| ||||||||||    
T  37744484 tgagatacaaagatggtgcagaatttacctttactaaagatgaagcaagaaacaaaatccaattgatttaagtgttgctactttctgaagagaggaagga 37744385  T
Q  198 tctgatatttctctattccatgaaagtaaaaccaatcct 236  Q
    ||| | |||  | |||||||||||||||||| |||||||    
T  37744384 tctcacattgttatattccatgaaagtaaaatcaatcct 37744346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 24558517 - 24558340
Alignment:
Q  17 aaggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatctgagatataaagatggagc 116  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||  ||| ||||||   |||||||||||||||||||    
T  24558517 aaggaatgtgagtacaaaaacaaaataaaagtaaatttgaggtataaatgattgaaccaaatccaatgatctctaaaacattgagatataaagatggagc 24558418  T
Q  117 --agaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagagg 192  Q
      | |||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| |||||||||| |||||    
T  24558417 atataatttacctttactaaaggtgaagcaagcaacaaaatcctattaatttaagtgttgctactttctgaatagagg 24558340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 37750492 - 37750335
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||  |    
T  37750492 ctagttgcaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgaatcaaatccaacaatcactaaaaaatt 37750393  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatc 156  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  37750392 gagatataaagatggagcagaatttacctttagtaaagatgaagcaagtaactaaatc 37750335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26608074 - 26607841
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||| ||  |||||||||||  || ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||  |    
T  26608074 ctagctgcaagtatgtagaaggaatgtgagagcaaaaacaaaataaaagtaaattt-acgtataaatgattgaaccaaatccaacaatcaataaaaaaat 26607976  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggat 198  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |||| | ||| |||||||||||    
T  26607975 gagatataaagatagagcagaatttacctctactaaagatgaagcaagcaacaaaatcctattgatttaagtgttgctacttccagaacagaggaaggat 26607876  T
Q  199 ctgatatttctctattccatgaaagtaaaaccaat 233  Q
    |||| |||  | |||||||||||||||||||||||    
T  26607875 ctgacattgttatattccatgaaagtaaaaccaat 26607841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26618641 - 26618407
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||||||  |||||||||||  || ||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||  |    
T  26618641 ctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaataaaagtaaatttgaggtataaatgaatgaactaaatccaacattcactaaaaaatt 26618542  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggat 198  Q
    ||||||||||||| ||||| || |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  26618541 gagatataaagatagagcataacttacctctgctagagatgaagcaagcaacaaaatcctattgatttaagtgttgctactttctgaacagaggaaggat 26618442  T
Q  199 ctgatatttctctattccatgaaagtaaaaccaat 233  Q
    |||| |||  | |||||||||||||||||||||||    
T  26618441 ctgacattgttatattccatgaaagtaaaaccaat 26618407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26620605 - 26620376
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||||||  |||||||||||  || ||||||| | |||||||||||||||||||||||||||||||||||||||        |||||| |    
T  26620605 ctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaatcaaagtaaatttgaggtataaatgattgaaccaaatccaa--------aaaaat-t 26620515  T
Q  99 gagatataaagatggagcagaatttacctttactaaagat-gaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaagga 197  Q
    ||  |||||||||  |||| ||||||||| |||||||||| ||| |||| |||||||||||||||||| ||||||||| ||||| |||| ||||||||||    
T  26620514 gatttataaagataaagcataatttacctctactaaagattgaaacaagcaacaaaatcctattgatttaagtgttgctactttatgaacagaggaagga 26620415  T
Q  198 tctgatatttctctattccatgaaagtaaaaccaatcct 236  Q
    ||||| |||| | ||||||||||||||||||||||||||    
T  26620414 tctgacatttttatattccatgaaagtaaaaccaatcct 26620376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 8248672 - 8248829
Alignment:
Q  42 taaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatc--tgagatataaagatggagcagaatttacctttactaaagatg 139  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||| |||||||    | ||||||||| ||||||||||||||||||||| |||         
T  8248672 taaaagtaaatttgaggtataagtgattgaaacaaatccaataatcgctaaaaaaaattaagatataaaaatggagcagaatttacctttattaa----- 8248766  T
Q  140 aagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggatctga 202  Q
    ||||||| ||||||||||||||  || ||| ||||| ||||| |||| ||||||  |||||||    
T  8248767 aagcaagaaacaaaatcctattactttaagggttgctactttgtgaacagaggagtgatctga 8248829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 25338645 - 25338415
Alignment:
Q  1 ctagctgcaagtatttaa--ggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    ||||||||||||||||||  | |||||||| ||| ||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||| |||||| |    
T  25338645 ctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaagtaaaagtaaattgtaggtataaatgattgaaccaaatccaataatcacaaaaaattt 25338546  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggat 198  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| || ||||||| |||    
T  25338545 gagatataaagatggagtagaatttacctttactaaagatgaagcaagcaacaaaatcctattgatttaagtgttgctactttctaaacagaggaaagat 25338446  T
Q  199 ctgatatttctctattccatgaaagtaaaac 229  Q
       |||||  | |||||||||||||||||||    
T  25338445 tcaatattgttatattccatgaaagtaaaac 25338415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27150750 - 27150555
Alignment:
Q  1 ctagctgcaagtatttaa--ggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    ||||||||||||||||||  | |||||||| ||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||  |    
T  27150750 ctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataatttaaccaaatccaacaatcactaaaaaatt 27150651  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaa 194  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||  | |||||||| |||||||    
T  27150650 gagatataaagatggagcaaaatttacctttactaaagatgaaccaagcaacaaaatcctattgatttaagtgttgttaatttctgaacagaggaa 27150555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 7703042 - 7703235
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||||||  ||||| ||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||  |    
T  7703042 ctagctgcaagtatttagaaggaacgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgaaccaaatccaacaatcactagaaaatt 7703141  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaag 195  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||| || |||| | |||||||||| ||| ||||    
T  7703142 gagatataaaaatggagcagaatttacctttactaaagatgaagcaag---caaaatcctattgatttaaatgtttctactttctgaagagaagaag 7703235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 24479798 - 24479962
Alignment:
Q  42 taaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatctgagatataaagatggagcagaatttacctttactaaagatgaa 141  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||| || |||||||| ||| ||||||||||||    
T  24479798 taaaagtaaatttgaggtataaatgattgaatcaaatccaataatcactaaaaaattgagatataaagatgtagtagaatttagcttaactaaagatgaa 24479897  T
Q  142 gcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggatctgatatt 206  Q
    ||||| |||  |||| |||||||| |  |||||| |||||||||| |||||||||||||||||||    
T  24479898 gcaagcaacttaatcatattgatttatatgttgctactttctgaatagaggaaggatctgatatt 24479962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 40016936 - 40017030
Alignment:
Q  43 aaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcact--aaaaatctgagatataaagatggagcagaatttacctttactaaa 135  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||| |||  |||||  |||||| ||||||| || || |||||||||||| ||||    
T  40016936 aaaagtaaattagaggtataaatgattgaaccaaattcaataataactaaaaaaaattgagatgtaaagatagaacaaaatttacctttattaaa 40017030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 31571498 - 31571682
Alignment:
Q  17 aaggaatgtgaggacacaaacaaattaaaagtaaatttgagg-tataaatgattgaaccaaatccaacaatcactaaaaatctgagatataaagatggag 115  Q
    |||||||||||| ||| ||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||    
T  31571498 aaggaatgtgagaacaaaaacaaaataaaagtaaatttgggggtataaatgattgaactaaatccaacaatcactaaaaaattgagatataaagatgcag 31571597  T
Q  116 cagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaaggatct 200  Q
     |||| |||||||||||||||||||| |||  |||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  31571598 aagaacttacctttactaaagatgaatcaaacaacaaaatcctattgatttaagtgttgccactttctgaacagaggaaggatct 31571682  T

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Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 39367637 - 39367443
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||| ||||||||||  ||||||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |||   |    
T  39367637 ctagctacaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgtaccaaatccaacaatcactgaaataat 39367538  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttctgaaaagaggaa 194  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||   |||||||||||||||||| ||||||||| |||||||||| |||||||    
T  39367537 gagatataa-gatggagcagaattttcctttactaaagatgaagcagccaacaaaatcctattgatttaagtgttgctactttctgaacagaggaa 39367443  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 18308796 - 18308970
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||||||  | |||||||||  || |||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||  |    
T  18308796 ctagctgcaagtatttagaatgaatgtgagatcaaaaactaaataaaaataaatttgaggtataaattattgaaccaaatccaacaatcactaagaaatt 18308895  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgtt 173  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||  |||||||    
T  18308896 gagatataaagatggagcagaatttacctttactagagatgaagcaagcagcaaaatcatattgataaaagtgtt 18308970  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 17113615 - 17113666
Alignment:
Q  112 ggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattga 163  Q
    |||||||||||||| ||||||||   ||||||||| ||||||||||||||||    
T  17113615 ggagcagaatttacatttactaatagtgaagcaagcaacaaaatcctattga 17113666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 17113569 - 17113602
Alignment:
Q  42 taaaagtaaatttgaggtataaatgattgaacca 75  Q
    |||||||||||||||||||||||| |||||||||    
T  17113569 taaaagtaaatttgaggtataaataattgaacca 17113602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 445777 - 445570
Alignment:
Q  1 ctagctgcaagtattta--aggaatgtgaggacacaaacaaattaaaagtaaatttgaggtataaatgattgaaccaaatccaacaatcactaaaaatct 98  Q
    |||||||||||||||||  |||||||| || ||| ||||||| ||||||||||||||||||||||||  ||||||||||||||| | | || |||||  |    
T  445777 ctagctgcaagtatttagaaggaatgtaagcacaaaaacaaaataaaagtaaatttgaggtataaatatttgaaccaaatccaatatttaccaaaaaatt 445678  T
Q  99 gagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttg-caactttctgaaaagaggaagga 197  Q
    || ||||||| |||||||| ||||||| |||||||||||| ||||||  ||||||||| |||||||| |||||||| ||  |||||||  ||||||||||    
T  445677 gaaatataaa-atggagcaaaatttacttttactaaagataaagcaaacaacaaaatcttattgatttaagtgttgccatttttctgagcagaggaagga 445579  T
Q  198 tctgatatt 206  Q
    | |||||||    
T  445578 tatgatatt 445570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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