View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10553_high_9 (Length: 250)

Name: NF10553_high_9
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10553_high_9
NF10553_high_9
[»] chr3 (1 HSPs)
chr3 (1-239)||(31221070-31221308)
[»] chr8 (1 HSPs)
chr8 (29-129)||(33714252-33714352)
[»] chr5 (1 HSPs)
chr5 (29-174)||(14295459-14295605)
[»] chr7 (1 HSPs)
chr7 (111-168)||(19719042-19719099)
[»] chr6 (1 HSPs)
chr6 (74-111)||(2514701-2514738)
[»] chr2 (1 HSPs)
chr2 (63-140)||(680491-680568)
[»] chr1 (2 HSPs)
chr1 (13-93)||(33527199-33527280)
chr1 (74-130)||(25479580-25479636)
[»] chr4 (1 HSPs)
chr4 (116-170)||(35064896-35064947)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 31221070 - 31221308
Alignment:
Q  1 aacttaatttgagcttatgaataaactctttctataacagaagatgaagtacagtcgaactgtttcgtgtaatctataagttattttcataagctgtcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31221070 aacttaatttgagcttatgaataaactctttctataacagaagatgaagtacagtcgaactgtttcgtgtaatttataagttattttcataagctgtcct 31221169  T
Q  101 tgagaccttttaaagataagctgaaaacaatttataaacacaatataagttgttatcataagttctctcagacaatttcataagctcaaataactcactt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31221170 tgagaccttttaaagataagctgaaaacaatttatgaacacaatataagttgttatcataagttctctcagacaatttcataagctcaaataactcactt 31221269  T
Q  201 caaacaactttatattcctctatacccacttaacccttt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31221270 caaacaactttatattcctctatacccacttaacccttt 31221308  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 33714352 - 33714252
Alignment:
Q  29 tttctataacagaagatgaagtacagtcgaactgtttcgtgtaatctataagttattttcataagctgtccttgagaccttttaaagataagctgaaaac 128  Q
    ||||||||||| ||||| || || |||| |||| ||| ||  |||||||||| |||||||||||||| ||   |||| ||| |||| |||||||||||||    
T  33714352 tttctataacacaagataaaataaagtcaaactattttgtacaatctataagctattttcataagctatctgggagagcttataaaaataagctgaaaac 33714253  T
Q  129 a 129  Q
    |    
T  33714252 a 33714252  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 14295459 - 14295605
Alignment:
Q  29 tttctataacagaagatgaagtacagtcgaactgttt-cgtgtaatctataagttattttcataagctgtccttgagaccttttaaagataagctgaaaa 127  Q
    ||||||||||| ||||| || || |||| |||||||| | | ||| ||||||| | ||||| |||||| |||| |||| |||||| |  |||||||||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaa 14295558  T
Q  128 caatttataaacacaatataagttgttatcataagttctctcagaca 174  Q
    ||  ||||  ||| |  ||||| |||| ||||||| |||||||||||    
T  14295559 cagcttatcgacatatcataagctgttttcataagctctctcagaca 14295605  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 19719042 - 19719099
Alignment:
Q  111 taaagataagctgaaaacaatttataaacacaatataagttgttatcataagttctct 168  Q
    ||||||||||||||||||| ||||| ||||    |||||||||| |||||||||||||    
T  19719042 taaagataagctgaaaacagtttatgaacatgtcataagttgttttcataagttctct 19719099  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 2514701 - 2514738
Alignment:
Q  74 ctataagttattttcataagctgtccttgagacctttt 111  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  2514701 ctataagttattttcataagctgtcctggagatctttt 2514738  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 680491 - 680568
Alignment:
Q  63 tttcgtgtaatctataagttattttcataagctgtccttgagaccttttaaagataagctgaaaacaatttataaaca 140  Q
    |||||| ||| ||||||| |||||||||||||| || |  ||| ||| | || |||||||||||||| ||||||||||    
T  680491 tttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaaca 680568  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 33527280 - 33527199
Alignment:
Q  13 gcttatgaataaactctttctataacagaagatgaagtacagtcgaactg-tttcgtgtaatctataagttattttcataag 93  Q
    |||||||||||| || |||||| |||| ||||| || ||||||| ||||| |||| | ||||||||||| | ||||||||||    
T  33527280 gcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataagctgttttcataag 33527199  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 25479580 - 25479636
Alignment:
Q  74 ctataagttattttcataagctgtccttgagaccttttaaagataagctgaaaacaa 130  Q
    ||||||||| |||||||||||| |||| |||| ||| | || |||||||||||||||    
T  25479580 ctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaa 25479636  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 35064896 - 35064947
Alignment:
Q  116 ataagctgaaaacaatttataaacacaatataagttgttatcataagttctctca 170  Q
    ||||||||||||||||||||||||   || || |||||| |||||||||||||||    
T  35064896 ataagctgaaaacaatttataaac---atgtaggttgttttcataagttctctca 35064947  T

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