View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_1 (Length: 461)
Name: NF10553_low_1
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 48494170 - 48493732
Alignment:
| Q |
18 |
ccagctgctgtggcaacaaatggggctgaaatttatttggcatttcagcttcaaacaacaattccatttgggaagcaaccaattttgttggcttttagta |
117 |
Q |
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| T |
48494170 |
ccagctgctgtggcaacaaatggggctgaaatttatttggcatttcagcttcaaacaacaattccatttgggaagcaaccaattttgttggcttttagta |
48494071 |
T |
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| Q |
118 |
ctaagcatccacatgaacaccacctgtcaaagcatgatgacaaaacaacaattatatttgatttttcttcaggtgcaaaatcaggtagctttttatttga |
217 |
Q |
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| T |
48494070 |
ctaagcatccacatgaacaccacctgtcaaagcatgatgacaaaacaacaattatatttgatttttcttcaggtgcaaaatcaggtagctttttatttga |
48493971 |
T |
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| Q |
218 |
gggtcttataattgaattagccattattttgatttaaaattttgatatagatacatttttcttatgacatgatgacttggcaattattccttttgcaggt |
317 |
Q |
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| T |
48493970 |
gggtcttataattgaattagccattattttgatttaaaattttgatatagatacatttttcttatgacatgatgacttggcaattattccttttgcaggt |
48493871 |
T |
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| Q |
318 |
tctatggatccagcatccaatagtttgattcaaatgagaaagaatcatggaataattggtataatagggtggggcttaatcctaccagtaggtgcaattg |
417 |
Q |
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| T |
48493870 |
tctatggatccagcatccaatagtttgattcaaatgagaaagaatcatggaataattggtataatagggtggggcttaatcctaccagtaggtgcaattg |
48493771 |
T |
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| Q |
418 |
ttgctaggtacttcaaacataaggaacccctttgcttct |
456 |
Q |
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| T |
48493770 |
ttgctaggtacttcaaacataaggaacccctttggttct |
48493732 |
T |
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