View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_18 (Length: 240)
Name: NF10553_low_18
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 36951075 - 36950866
Alignment:
| Q |
12 |
agcaaaggctttgatgatgaaaaatatatctttttcagggcttaacgcgggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaact |
111 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951075 |
agcaaaggctttaataatgaaaaatatatctttttcagggcttaacgccggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaact |
36950976 |
T |
|
| Q |
112 |
agtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttttttatcgcatgtgcattctgcggctattacagtcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
36950975 |
agtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttctttatcgcatgtgcattctgcggctattagagtcg |
36950876 |
T |
|
| Q |
212 |
ggattacaag |
221 |
Q |
| |
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|| ||||||| |
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| T |
36950875 |
gggttacaag |
36950866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 36938850 - 36938645
Alignment:
| Q |
12 |
agcaaaggctttgatgatgaaaaatatatctttttcagggcttaacgcgggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36938850 |
agcaaaggctttgatgatgaaaaatatatctttttcggggcttaacgccggtatcactttgccaagaagtggaatacaaacaccaattccacttgcaact |
36938751 |
T |
|
| Q |
112 |
agtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttttttatcgcatgtgcattctgcggctattacagtcg |
211 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| || ||| || |||||||| |||||||||| ||||| |
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| T |
36938750 |
aatattgatactaaagctgctatcttataacgaagagctttgggtttgtctctatctaaatcttcttcatcacacgtgcattcggcggctattagagtcg |
36938651 |
T |
|
| Q |
212 |
ggatta |
217 |
Q |
| |
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|||||| |
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| T |
36938650 |
ggatta |
36938645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 36955562 - 36955356
Alignment:
| Q |
12 |
agcaaaggctttgatgatgaaaaatatatctttttcagggcttaacgcgggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaact |
111 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||||||||| ||||| ||||| |
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| T |
36955562 |
agcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaattgcacttacaact |
36955463 |
T |
|
| Q |
112 |
agtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttttttatcgcatgtgcattctgcggctattacagtcg |
211 |
Q |
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| ||||| |||||||||||||| || ||||| | |||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||| ||| | |
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| T |
36955462 |
aaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcggctattagagttg |
36955363 |
T |
|
| Q |
212 |
ggattac |
218 |
Q |
| |
|
||||||| |
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|
| T |
36955362 |
ggattac |
36955356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 36993243 - 36993041
Alignment:
| Q |
12 |
agcaaaggctttgatgatgaaaaatatatctttttcagggcttaacgcgggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaact |
111 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||||||||||||| ||||||||||| |
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| T |
36993243 |
agcaaatgctttgatgataaaaaatatatctttttcagggcttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaact |
36993144 |
T |
|
| Q |
112 |
agtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttttttatcgcatgtgcattctgcggctattacagtcg |
211 |
Q |
| |
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| |||||| |||||||| ||||| || || || || ||||| ||| |||| || |||||||||| || || |||||||| ||||| ||||||| ||| | |
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| T |
36993143 |
aatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttg |
36993044 |
T |
|
| Q |
212 |
gga |
214 |
Q |
| |
|
||| |
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|
| T |
36993043 |
gga |
36993041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 37018683 - 37018481
Alignment:
| Q |
12 |
agcaaaggctttgatgatgaaaaatatatctttttcagggcttaacgcgggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaact |
111 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| | ||||||||||||| ||||||||||| |
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| T |
37018683 |
agcaaatgctttgatgataaaaaatatatctttttcagggcttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaact |
37018584 |
T |
|
| Q |
112 |
agtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttttttatcgcatgtgcattctgcggctattacagtcg |
211 |
Q |
| |
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| |||||| |||||||| ||||| || || || || ||||| ||| |||| || |||||||||| || || |||||||| ||||| ||||||| ||| | |
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| T |
37018583 |
aatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttg |
37018484 |
T |
|
| Q |
212 |
gga |
214 |
Q |
| |
|
||| |
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|
| T |
37018483 |
gga |
37018481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 36951405 - 36951438
Alignment:
| Q |
12 |
agcaaaggctttgatgatgaaaaatatatctttt |
45 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
36951405 |
agcaaaggctttaatgatgaaaaatatatctttt |
36951438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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