View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_2 (Length: 458)
Name: NF10553_low_2
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 22806984 - 22806552
Alignment:
| Q |
11 |
cataggatatgaagaaattatggtgttgagttctattatgttcctatattttgttaatttcaaacaccactcatactcactattcaatgaatttcatgcg |
110 |
Q |
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| T |
22806984 |
cataggatatgaagaaattatggtgttgagttctattatgttgctgtattttgttaatttcaaacaccactcatacttgctactcaatgaatt-catgct |
22806886 |
T |
|
| Q |
111 |
tctttatcctatttgatttatggcttagtattccttaggtttatctcacatgtaccttggccccgttacaa-cctgaataaagaccttttgatctgtaca |
209 |
Q |
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| T |
22806885 |
tctttatcctcttcgatttatgccttaatattccttaggtttatcccacctgtaccttggccccgttacaaacctgaataaagaccttttgatctgtaca |
22806786 |
T |
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| Q |
210 |
tgtatgtgcttcattgtatggatgtcctccatctttggggacgtaagaggcttgtcaagcctatggcagtgctaactttgatgatgtgctttgagtgcaa |
309 |
Q |
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| T |
22806785 |
tgtatgtgctttattgtgtggatgtcctccatctttggggatgtaagaggcttgtcaagcctatggcagtgctaactatgatgatgtgctttgagtgcaa |
22806686 |
T |
|
| Q |
310 |
atacttaccctgacactccattttatacagatcgcacacaccacgaggggttgagtgcactttatacttatatattacgtgaggttctatcattcttgat |
409 |
Q |
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||||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
22806685 |
atactaaccctaacacttcattttatacagattgcacacaccacgagggattgagtgcactttatacttgtatattccgtgaggttctatcattcttgat |
22806586 |
T |
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| Q |
410 |
tcattttttagtctaatagccaccttgttcattg |
443 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
22806585 |
gcatttgttagtctaatagccaccttgttcattg |
22806552 |
T |
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