View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_22 (Length: 233)
Name: NF10553_low_22
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_22 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33686032 - 33685806
Alignment:
| Q |
1 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686032 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataat |
33685933 |
T |
|
| Q |
101 |
tttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagcc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
33685932 |
tttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagcc |
33685833 |
T |
|
| Q |
201 |
aacagtctaactctccgccaccactcg |
227 |
Q |
| |
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|||| |||| ||||||||||||||||| |
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| T |
33685832 |
aacactctagctctccgccaccactcg |
33685806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33674842 - 33674614
Alignment:
| Q |
1 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674842 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataat |
33674743 |
T |
|
| Q |
101 |
tttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagcc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
33674742 |
tttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaatttaatctcttgctaaaacgtagcaaactcgccgccatcaaagctatagcc |
33674643 |
T |
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| Q |
201 |
aacagtctaactctccgccaccactcgtc |
229 |
Q |
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|||| ||| |||||||||||||||||||| |
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| T |
33674642 |
aacactctcactctccgccaccactcgtc |
33674614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33664242 - 33664016
Alignment:
| Q |
1 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33664242 |
aaaaacactcacaaacttatcaaaccgttacaacaatggaaattgaaacaaaccaaacaatggtagttacaaagaaagtatggaacacactacgtataat |
33664143 |
T |
|
| Q |
101 |
tttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagcc |
200 |
Q |
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||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
33664142 |
tttcttcatgtttacaaaaaacattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagcc |
33664043 |
T |
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| Q |
201 |
aacagtctaactctccgccaccactcg |
227 |
Q |
| |
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|||| |||| ||||||||||||||||| |
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| T |
33664042 |
aacactctagctctccgccaccactcg |
33664016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 33693225 - 33693027
Alignment:
| Q |
35 |
aatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgttaacaaaaaacatagccaaaagc |
134 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
33693225 |
aatggatattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaaacattgccaaaagc |
33693126 |
T |
|
| Q |
135 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacagtctaactctccgccaccactcgtccgcc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
33693125 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgctatcaaagccatagccaacactctcactctccgccaccactcgtccgcc |
33693027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 86524 - 86751
Alignment:
| Q |
13 |
aaactcatcaaaccgttacaacaa-------tggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
105 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
86524 |
aaactcatcaaaccgttacaacaaacaagaatggaaattgaaacaaaccaactaattatagtaacaaagaaagtatggaacacactgcgtataattttgt |
86623 |
T |
|
| Q |
106 |
tcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacag |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
86624 |
tcatgttaacaaaaaacatagctaaaagcaaaatggtagcagaattaaatctcttgctaaaacgtagcaaactcgccgccatcaaagccatagccaacac |
86723 |
T |
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| Q |
206 |
tctaactctccgccaccactcgtccgcc |
233 |
Q |
| |
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|||| ||||||||||||||||||||||| |
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| T |
86724 |
tctagctctccgccaccactcgtccgcc |
86751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 103188 - 103411
Alignment:
| Q |
1 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataat |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| |
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|
| T |
103188 |
aaaaacacacgcaaactcatcaaaccgttacaacaatggaaattgaaacaacccaaccaatgatagtaacaaagaaagtatggaacacactacgtctaat |
103287 |
T |
|
| Q |
101 |
tttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagcc |
200 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
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| T |
103288 |
tttgttaatgttaaaaaaaaacatagccaaaagcaaaaaggtagcacaattaaatctcttgctaaaacgtagcaagctcgccgctatcaaagccatagcc |
103387 |
T |
|
| Q |
201 |
aacagtctaactctccgccaccac |
224 |
Q |
| |
|
||| ||| || |||||||||||| |
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|
| T |
103388 |
aaccctctcaccctccgccaccac |
103411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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