View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_27 (Length: 227)
Name: NF10553_low_27
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_27 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 10597411 - 10597604
Alignment:
| Q |
20 |
gttctaagcacgtgtaagaaatttttatattttccacaattttggtnnnnnnnnn--tacaaataaattgtttttatatacatctgacatcgcttaatca |
117 |
Q |
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| T |
10597411 |
gttctaagcacgtgtaagaaatttttatatttttcacaattttggtaaaaaaaaaaatacaaataaattgtttttatatacatatgacatcgcttcatca |
10597510 |
T |
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| Q |
118 |
cacatcgtggtaagtaaattgtttccatgatcgacctcctagacacaaaaccgaattggttatcaataattcaattttcttttcttaatctctg |
211 |
Q |
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| T |
10597511 |
cacatcgtggtaagtaaattgtttccatgatcgacctcctagacacaaaaccgaattggttatcaataattcaattttctttttttaatctctg |
10597604 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 36651151 - 36651097
Alignment:
| Q |
127 |
gtaagtaaattgtttccatgatcgacctcctagacacaaaaccgaattggttatc |
181 |
Q |
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| T |
36651151 |
gtaagtagattgcttccataatcgacctcccagacataaaaccaaattggttatc |
36651097 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 29173627 - 29173708
Alignment:
| Q |
100 |
tctgacatcgcttaatcacacatcgtggtaagtaaattgtttccatgatcgacctcctagacacaaaaccgaattggttatc |
181 |
Q |
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| T |
29173627 |
tctgatatcgctccatcacacgtcgaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatc |
29173708 |
T |
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Target: scaffold0606 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 8860 - 8800
Alignment:
| Q |
115 |
tcacacatcgtggtaagtaaattgtttccatgatcgacctcctagacacaaaaccgaattg |
175 |
Q |
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| T |
8860 |
tcacacattgtagtaagtatattgtttttatggtcgacctcctagacataaaactgaattg |
8800 |
T |
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