View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_3 (Length: 447)
Name: NF10553_low_3
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 2022054 - 2021634
Alignment:
| Q |
11 |
cagagagttaagccaaaataattagaaaatcattatacacataagctccggtgaaggtcaaatcgatcaagattgcccaaattcaaaatttggctagaac |
110 |
Q |
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| T |
2022054 |
cagagagttaagccaaaataattagaaaatcattatacacataagctccggtgaaggtcaaatcgatcaagattgcccaaattcaaaatttggctagaac |
2021955 |
T |
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| Q |
111 |
aatcattgaccagactttacttatcggtcaaactccagattaccagtgaagttcgaattgatcgggagtacccaagttcgaagtctggccgaagcaatca |
210 |
Q |
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| T |
2021954 |
aatcattgaccagactttacttatcggccaaactccagattaccagtgaagttcgaattgatcgggagtacccgagttcgaagtctggccgaagcaatca |
2021855 |
T |
|
| Q |
211 |
ttgaccagattttacttacttaacagtcaaactccaattaccagacatgtaaatttggaaaatcatgtaaaaatcaagctaccaaattacaattataatt |
310 |
Q |
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| T |
2021854 |
ttgaccagattttacttacttaacagtcaaactccaattaccagacatgtaaatttggaaaatcatgtaaaaatcaagctaccaaattacaatcataatt |
2021755 |
T |
|
| Q |
311 |
gaatccaatatacacataagatgttggaaagaaaatcctaaatcatagattagaatcaagttgcagcatttagttacctctctttcattacacattggaa |
410 |
Q |
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| T |
2021754 |
gaatccaatatacacataaaatgttggaaagaaaatcctaaatcatagattagaatcaagttgcagcatttagttacctctctttcattacacattggaa |
2021655 |
T |
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| Q |
411 |
tctgaacaagaaccataggaa |
431 |
Q |
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| T |
2021654 |
tctgaacaagaaccataggaa |
2021634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 26833440 - 26833483
Alignment:
| Q |
386 |
acctctctttcattacacattggaatctgaacaagaaccatagg |
429 |
Q |
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| T |
26833440 |
acctctctttcattatacattggaacttgaacaagaaccatagg |
26833483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 3473674 - 3473628
Alignment:
| Q |
384 |
ttacctctctttcattacacattggaatctgaacaagaaccatagga |
430 |
Q |
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| T |
3473674 |
ttacctccctttcattacacataggaatctgaaccaaaaccatagga |
3473628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 32253068 - 32253113
Alignment:
| Q |
87 |
ccaaattcaaaatttggctagaacaatcattgaccagactttactt |
132 |
Q |
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| T |
32253068 |
ccaagttcaaattatggctagaacaatcattgactagactttactt |
32253113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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