View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_4 (Length: 414)
Name: NF10553_low_4
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 16900965 - 16900581
Alignment:
| Q |
20 |
gtgtgtacctaatacagcttttaaatcaagctgtgattttggcccaagatattaagcaaatagaataagtataagcaaagtggctaagtgtttggaattc |
119 |
Q |
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| T |
16900965 |
gtgtgtatctaatacagcttttaaatcaagctgtgattttggcctaagatattaagcaaatagaataagtataagcaaagtggctaagtgtttggaattc |
16900866 |
T |
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| Q |
120 |
ctagatttctcatataattcaaattacttttaaggaattttgatccaaaagaagatagaggatgtgttttaacataacaagataaagggttatctctatc |
219 |
Q |
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| T |
16900865 |
ctagatttctcatataattcaaattacttttaaggaattttgatccaaaagaagatagaggatgtgttttaacataacaagataaagggttatctctatc |
16900766 |
T |
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| Q |
220 |
ttaattatattctttcaaactaatttgatgttattgttccactaacaatggattttgtatgaagtgattgtttaacacaatacaagttggcattaatatt |
319 |
Q |
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| T |
16900765 |
ttaattatattctttcaaactaatttgatgttattgttccactaacaatggattttgtatgaagtgattgtttaacacaatacaagtcggcattaatatt |
16900666 |
T |
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| Q |
320 |
ttttatctaattgttttccattcaaaatcatcataaaataggtatttatgggtatttttagtgaacaccacctacagcccctatg |
404 |
Q |
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| T |
16900665 |
ttttatctaattgttttccattcaaaatcatcataaaataggtatttatggttatttttagtgaacaccacctacagcccctatg |
16900581 |
T |
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