View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10553_low_5 (Length: 399)

Name: NF10553_low_5
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10553_low_5
NF10553_low_5
[»] chr1 (1 HSPs)
chr1 (28-384)||(26427503-26427859)
[»] chr2 (2 HSPs)
chr2 (35-282)||(28009109-28009377)
chr2 (314-363)||(28009058-28009107)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 28 - 384
Target Start/End: Original strand, 26427503 - 26427859
Alignment:
Q  28 caaagggttctgcctcaaaggaagcaaaagggttagggttagtcataaactcatccacataaaaattggttgagttcaaaagctcttgttgtggttcctc 127  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26427503 caaagggttctgcctcaaaggaagcaaaggggttagggttagtcataaactcatccacaaaaaaattggttgagttcaaaagctcttgttgtggttcctc 26427602  T
Q  128 tcttttctcctcgtagcatagcttttggcgttttggacatgtaaggtaattggtgaaatcttcctcatttgggaaaatttcgttcattgaaacaaaccca 227  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||    
T  26427603 tcttttctcatcgtagcatagcttttggcgttttggacatgtcaggtaattggtgaaatcttcctcatttgggaaaatttcattcattgaaacgaagcca 26427702  T
Q  228 tcattttgagaagaaaaagtggagtcaacaagtagttgatcatcttgactagggttacggtaagtttcatttgagtaaaaacaaggagtttgaaaaatga 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  26427703 tcattttgagaagaaaaagtggagtcaacaagtagttgatcatcttgacaagggttagggtaagtttcagttgagtaaaaacaaggagtttgaaaaatga 26427802  T
Q  328 agctttcatctaaaagagaagtttcattcaaatagttagaggaaaaatggtggtttt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427803 agctttcatctaaaagagaagtttcattcaaatagttagaggaaaaatggtggtttt 26427859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 28009377 - 28009109
Alignment:
Q  35 ttctgcctcaaaggaagcaaaagggttagggttag------tcataaactcatccacataaaaattggttgagttcaaaagctcttgttgtggttcctct 128  Q
    |||||||||||||||||||||||||||||||||||      ||| ||||||||||| | |||||||||||||||||||||||||||||||||| || |||    
T  28009377 ttctgcctcaaaggaagcaaaagggttagggttagggttagtcacaaactcatccataaaaaaattggttgagttcaaaagctcttgttgtggctcttct 28009278  T
Q  129 cttttctcctcgt---agcata---gcttttggcgttttggacatgtaag---gtaattggtgaaa------tcttcctcatttgggaaaatttcgttca 213  Q
    ||||||||||| |   || |||   ||||||||||||||||||||| |||   ||| ||| |||||      ||||||||||||||||||||||| ||||    
T  28009277 cttttctcctcctcatagtatatcagcttttggcgttttggacatggaagctggtagttgttgaaaatgaaatcttcctcatttgggaaaatttcattca 28009178  T
Q  214 ttgaaacaaacccatcattttgagaagaaaaagtggagtcaacaagtagttgatcatcttgactagggt 282  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  28009177 ttgaaacaaagtcatcattttgagaagaaaaagtggagtcaacaagtagttgttgatcttgacaagggt 28009109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 28009107 - 28009058
Alignment:
Q  314 agtttgaaaaatgaagctttcatctaaaagagaagtttcattcaaatagt 363  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  28009107 agtttgaaaaatgaagctttcatctaaaagagaagcttcattgaaatagt 28009058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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