View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10553_low_9 (Length: 293)
Name: NF10553_low_9
Description: NF10553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10553_low_9 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 12870973 - 12870777
Alignment:
| Q |
28 |
tctaattaagttagaataaaacaaagattaaacggagtcactatagtctatctatcataatcacaaaaacatattccaacatatattttacaagttagtt |
127 |
Q |
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| T |
12870973 |
tctaattaagttaaaataaaacaaagattaaacggagtcactatagtctatctatcataatcacaaaaacatcttccaacatatattttacaagttagtt |
12870874 |
T |
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| Q |
128 |
tggtcctcaaatagcgaaatgtgtatttaagaatgtattttgaattttcaatacatttagaaactgtaataacaacgactcacacatttagggacga |
224 |
Q |
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| T |
12870873 |
tggtcctcaaatagcgaaatgtgtatttaagaatgtattttgaattttcaatacatttagaaactgtaataacaacgactcacacatttagggacga |
12870777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 36176921 - 36176950
Alignment:
| Q |
224 |
aggttcaaaccccggacacctcacttattc |
253 |
Q |
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| T |
36176921 |
aggttcaaaccccggacacctcacttattc |
36176950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 19957372 - 19957335
Alignment:
| Q |
218 |
gggacgaggttcaaaccccggacacctcacttattcac |
255 |
Q |
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| T |
19957372 |
gggacgaggttcgaaccccggacaccccacttattcac |
19957335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 2970237 - 2970270
Alignment:
| Q |
222 |
cgaggttcaaaccccggacacctcacttattcac |
255 |
Q |
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| T |
2970237 |
cgaggttcaaaccccggacaccccacttattcac |
2970270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 108407 - 108375
Alignment:
| Q |
223 |
gaggttcaaaccccggacacctcacttattcac |
255 |
Q |
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| T |
108407 |
gaggttcaaaccccggacaccccacttattcac |
108375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 19208922 - 19208890
Alignment:
| Q |
223 |
gaggttcaaaccccggacacctcacttattcac |
255 |
Q |
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| T |
19208922 |
gaggttcaaactccggacacctcacttattcac |
19208890 |
T |
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