View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10554_low_1 (Length: 422)
Name: NF10554_low_1
Description: NF10554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10554_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 45657112 - 45657506
Alignment:
| Q |
1 |
ataataagacagagtagaagattaaaaaacctcaacatggaggacttttccatatttttcaaacaaagaacgaacatcttcggtggtacttgaccatgga |
100 |
Q |
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| T |
45657112 |
ataataagacagagtagaagattaaaaaacctcaacatggaggacttttccatatttttcaaacaaagaacgaacatcttcggtggtacttgaccatgga |
45657211 |
T |
|
| Q |
101 |
acattctgagcaagtaacctggtagtagacaactcttccgtttgttcctgggtggttacttgttgttcggaagtagaggcgaatctgagagtagaataaa |
200 |
Q |
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| T |
45657212 |
acattctgagcaagtaacctggtagtagacaactcttccgtttgttcctgggtggttacttgttgttcggaagtagaggcgaatctgagagtagaattaa |
45657311 |
T |
|
| Q |
201 |
agtgttgtttggttgtgataataagggttggggtatgagtaacagataaacgaagagaagaagaaaagaaaggattaggggaataatgtttcttcttgtc |
300 |
Q |
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| T |
45657312 |
agtgttgtttggttgtgataataagggttggggtatgagtaacagataaacgaagagaagaagaaaagaaaggatcaggggaataatgtttcttcttgtc |
45657411 |
T |
|
| Q |
301 |
aaagtcgaaagagtttgttattattacatggtgttttttggaggataattgagttggacatggaagagtagtacgtagtagcgccattagattca |
395 |
Q |
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| T |
45657412 |
aaagtcgaaagagtttgttattattacatggtgttttgtggaggataattgagttggacatggaagagtagtacgtagtattgccattagattca |
45657506 |
T |
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