View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10554_low_4 (Length: 318)
Name: NF10554_low_4
Description: NF10554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10554_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 43727003 - 43727293
Alignment:
| Q |
19 |
gttgatatagtgatagattcccttgtatgaaaaaggtagaatcataaaaagggaaaagttccaaaaaatttggtaggcat--tcaatttcaatcaatatt |
116 |
Q |
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| T |
43727003 |
gttgatatagtgatagattcccttgtatgaaaaaggtagaatcataaaaagggaaaagttccaaaaaatttggtaggcatattcaatttcaatcaatatt |
43727102 |
T |
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| Q |
117 |
ctgagccgaaattagtgctgtaatgagaaaagttggtaacaatgtttcnnnnnnnnnnnnngtaatagggaatgggaatgttgtggttaacagccatgat |
216 |
Q |
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| T |
43727103 |
ctgagccaaaattagtgctgtaatgaaaaaagttggtaacaatgtttcttttttcttttt-gtaatagggaatgggaatgttgtggttaacagccatgat |
43727201 |
T |
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| Q |
217 |
cccagcggcacggccgcctccgtgcaacaatccaacaaaaggctgtaaatcagcaacaacaggtcaaatggcaatgttactctccgcctttg |
308 |
Q |
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| T |
43727202 |
cccagcggcacggccgcctccgtgcaacaatccaacaaaaggctgtaaatcagcaacaacaggtcaaatggcaatgttactctccgcctttg |
43727293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 43685942 - 43686059
Alignment:
| Q |
183 |
agggaatgggaatgttgtggttaacagccatgatcccagcggcacggccgcctccgtgcaacaatccaacaaaaggctgtaaatcagcaacaacaggtca |
282 |
Q |
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||||||||| |||| ||||||||||||||||| |||||||||| | ||| ||| | |||| ||||||| | ||||||||| |||||||| | ||||||| |
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| T |
43685942 |
agggaatggcaatgctgtggttaacagccatggtcccagcggcgcagcctcctgcttgcagcaatccacctgaaggctgtatatcagcaaaaccaggtca |
43686041 |
T |
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| Q |
283 |
aatggcaatgttactctc |
300 |
Q |
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| T |
43686042 |
aatggcaatgttactctc |
43686059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 43713264 - 43713389
Alignment:
| Q |
181 |
atagggaatgggaatgttgtggttaacagccatgatcccagcggcacggccgcctccgtgcaacaatccaacaaaaggctgtaaatcagcaacaacaggt |
280 |
Q |
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|||||||||| | ||||||||||||||||||||||||| ||||||||||| || | |||||| ||||| | |||| ||| ||||||||||| ||||| |
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| T |
43713264 |
atagggaatgtcactgttgtggttaacagccatgatcccggcggcacggccttctgcttgcaaccatccatctgaaggttgtgaatcagcaacaccaggt |
43713363 |
T |
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| Q |
281 |
caaatggcaatgttactctccgcctt |
306 |
Q |
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||| ||||||||||| |||| ||||| |
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| T |
43713364 |
caattggcaatgttattctctgcctt |
43713389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 300
Target Start/End: Original strand, 43702440 - 43702559
Alignment:
| Q |
181 |
atagggaatgggaatgttgtggttaacagccatgatcccagcggcacggccgcctccgtgcaacaatccaacaaaaggctgtaaatcagcaacaacaggt |
280 |
Q |
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|||||||||| | || |||||||||||||||||||||| |||||||||| ||| | |||||| ||||| | |||| ||| ||||||||||| ||||| |
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| T |
43702440 |
atagggaatgtcactgctgtggttaacagccatgatcccgtcggcacggcctcctgcttgcaaccatccatctgaaggttgtgaatcagcaacaccaggt |
43702539 |
T |
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| Q |
281 |
caaatggcaatgttactctc |
300 |
Q |
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||| ||||||||||| |||| |
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| T |
43702540 |
caattggcaatgttattctc |
43702559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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