View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10554_low_5 (Length: 275)
Name: NF10554_low_5
Description: NF10554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10554_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 3642149 - 3642395
Alignment:
| Q |
18 |
acaaggactgcataattgttatacaagtcgtcaatgacaattcattcaagaatatcatcagtgccaaagttaacatgaccaggatattgatgcgaataaa |
117 |
Q |
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| T |
3642149 |
acaaggactgcataattgttatacaagtcgtcaatgacaattcattcaagaatatcatcagtgccaaagttaacatgaccaggatattgatgcgaataaa |
3642248 |
T |
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| Q |
118 |
ctaaccaaggcagctgaaattagatgaacaaatgctacactagacaatggttccgattttccttgttgaaacttctctggcagtcaatactttaaaattt |
217 |
Q |
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| T |
3642249 |
ctaaccaaggcagctgaaattagatgaacaaatgctacactagacaatggttccgattttccttgttgaaacttctccggcagtcaatactttaaaattt |
3642348 |
T |
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| Q |
218 |
gagacaacaaatgaatcttgagacgatcataaagttagcagcttcat |
264 |
Q |
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| T |
3642349 |
gagacaacaaatgaatcttgagacgatcataaagttagcagcttcat |
3642395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 9806801 - 9806860
Alignment:
| Q |
205 |
tactttaaaatttgagacaacaaatgaatcttgagacgatcataaagttagcagcttcat |
264 |
Q |
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| T |
9806801 |
tactttataatttgagacaacaaatgaatcttgagataatcataaggttaacagcttcat |
9806860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 10606935 - 10606872
Alignment:
| Q |
72 |
tcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaaggcagctgaa |
135 |
Q |
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| T |
10606935 |
tcatcagtgccagagttaaaaggacctggatattaattggaataaactaaacaaggcagctgaa |
10606872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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