View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10554_low_6 (Length: 207)

Name: NF10554_low_6
Description: NF10554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10554_low_6
NF10554_low_6
[»] chr5 (17 HSPs)
chr5 (3-207)||(8360991-8361195)
chr5 (1-42)||(30894385-30894426)
chr5 (5-45)||(35678092-35678132)
chr5 (5-45)||(40297939-40297979)
chr5 (5-48)||(34082096-34082139)
chr5 (1-42)||(12049122-12049163)
chr5 (5-42)||(12049390-12049427)
chr5 (1-42)||(16329848-16329889)
chr5 (5-46)||(27264378-27264419)
chr5 (1-42)||(28620042-28620083)
chr5 (5-42)||(41032459-41032496)
chr5 (5-45)||(5891753-5891793)
chr5 (5-53)||(23502401-23502449)
chr5 (5-45)||(25566815-25566855)
chr5 (5-45)||(28251651-28251691)
chr5 (5-45)||(29183133-29183173)
chr5 (5-45)||(38465969-38466009)
[»] scaffold0592 (1 HSPs)
scaffold0592 (1-42)||(8979-9020)
[»] scaffold0227 (1 HSPs)
scaffold0227 (5-42)||(766-803)
[»] chr8 (14 HSPs)
chr8 (5-46)||(5577573-5577614)
chr8 (5-42)||(6655551-6655588)
chr8 (5-42)||(6735953-6735990)
chr8 (1-45)||(4147053-4147097)
chr8 (5-45)||(35409713-35409753)
chr8 (5-44)||(29233543-29233582)
chr8 (1-42)||(2321786-2321827)
chr8 (5-42)||(4132757-4132794)
chr8 (5-42)||(6641599-6641636)
chr8 (5-42)||(7013352-7013389)
chr8 (5-42)||(14024313-14024350)
chr8 (1-42)||(28596199-28596240)
chr8 (1-42)||(36226684-36226725)
chr8 (5-45)||(1985842-1985882)
[»] chr7 (21 HSPs)
chr7 (5-46)||(227956-227997)
chr7 (5-42)||(10356120-10356157)
chr7 (1-46)||(38445403-38445448)
chr7 (5-45)||(11275187-11275227)
chr7 (5-45)||(18798283-18798323)
chr7 (5-45)||(49081606-49081646)
chr7 (5-47)||(18073814-18073856)
chr7 (4-46)||(23358966-23359008)
chr7 (5-46)||(37996284-37996326)
chr7 (5-42)||(4061261-4061298)
chr7 (5-53)||(7195447-7195496)
chr7 (5-42)||(9629289-9629326)
chr7 (1-42)||(10350809-10350850)
chr7 (5-46)||(18295851-18295892)
chr7 (5-42)||(30140923-30140960)
chr7 (5-42)||(30699026-30699063)
chr7 (1-42)||(34533217-34533258)
chr7 (1-42)||(44214662-44214703)
chr7 (5-45)||(36376335-36376375)
chr7 (3-47)||(38974408-38974452)
chr7 (5-45)||(48871361-48871401)
[»] chr2 (13 HSPs)
chr2 (1-46)||(1380997-1381042)
chr2 (5-45)||(1374798-1374838)
chr2 (5-43)||(34981655-34981693)
chr2 (5-42)||(21568198-21568235)
chr2 (5-42)||(31784524-31784561)
chr2 (5-42)||(41072101-41072138)
chr2 (5-45)||(315018-315058)
chr2 (5-45)||(17799102-17799142)
chr2 (5-45)||(19026090-19026130)
chr2 (6-42)||(22136896-22136932)
chr2 (5-45)||(24365143-24365183)
chr2 (5-45)||(35699125-35699165)
chr2 (5-45)||(42445372-42445412)
[»] scaffold0022 (2 HSPs)
scaffold0022 (5-45)||(139175-139215)
scaffold0022 (5-47)||(139447-139489)
[»] chr6 (10 HSPs)
chr6 (5-45)||(7324655-7324695)
chr6 (5-42)||(14997012-14997049)
chr6 (1-42)||(23585247-23585288)
chr6 (1-42)||(27223578-27223619)
chr6 (5-42)||(30239477-30239514)
chr6 (5-45)||(9067452-9067492)
chr6 (5-45)||(10977931-10977971)
chr6 (5-49)||(13042681-13042725)
chr6 (5-45)||(15150001-15150041)
chr6 (5-45)||(17965839-17965879)
[»] chr4 (23 HSPs)
chr4 (1-45)||(19869427-19869471)
chr4 (5-45)||(31250478-31250518)
chr4 (5-44)||(31209491-31209530)
chr4 (1-42)||(7666467-7666508)
chr4 (5-42)||(7705862-7705899)
chr4 (5-42)||(13607920-13607957)
chr4 (5-46)||(20472548-20472589)
chr4 (5-42)||(20473984-20474021)
chr4 (5-42)||(22160101-22160138)
chr4 (5-42)||(26675056-26675093)
chr4 (1-42)||(29548449-29548490)
chr4 (1-42)||(43821967-43822008)
chr4 (1-42)||(48277919-48277960)
chr4 (1-42)||(52045985-52046026)
chr4 (5-42)||(52114407-52114444)
chr4 (5-45)||(17554045-17554085)
chr4 (5-45)||(23770040-23770080)
chr4 (5-45)||(28158896-28158936)
chr4 (5-45)||(28291927-28291967)
chr4 (5-45)||(30998457-30998497)
chr4 (9-45)||(34158471-34158507)
chr4 (5-45)||(34158746-34158786)
chr4 (5-45)||(34957630-34957670)
[»] chr1 (18 HSPs)
chr1 (1-53)||(6809338-6809389)
chr1 (5-45)||(20359271-20359311)
chr1 (5-45)||(20551659-20551699)
chr1 (3-45)||(5225623-5225665)
chr1 (5-42)||(8029230-8029267)
chr1 (1-42)||(21727615-21727656)
chr1 (1-42)||(32038108-32038149)
chr1 (5-42)||(33811698-33811735)
chr1 (5-42)||(33871168-33871205)
chr1 (5-42)||(39427686-39427723)
chr1 (5-42)||(43677106-43677143)
chr1 (5-46)||(52143164-52143205)
chr1 (5-42)||(52363452-52363489)
chr1 (5-45)||(11204772-11204812)
chr1 (5-45)||(22071163-22071203)
chr1 (5-45)||(32558212-32558252)
chr1 (5-45)||(36230552-36230592)
chr1 (5-45)||(49227120-49227160)
[»] scaffold0951 (1 HSPs)
scaffold0951 (5-46)||(3704-3745)
[»] scaffold0864 (1 HSPs)
scaffold0864 (1-42)||(2647-2688)
[»] scaffold0370 (2 HSPs)
scaffold0370 (5-42)||(10631-10668)
scaffold0370 (5-42)||(15921-15958)
[»] scaffold0328 (1 HSPs)
scaffold0328 (5-50)||(16027-16072)
[»] scaffold0272 (1 HSPs)
scaffold0272 (5-42)||(21122-21159)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-42)||(78993-79034)
[»] chr3 (13 HSPs)
chr3 (1-42)||(257705-257746)
chr3 (5-42)||(7858235-7858272)
chr3 (1-42)||(21841730-21841771)
chr3 (6-47)||(22202757-22202798)
chr3 (1-42)||(28964423-28964464)
chr3 (5-42)||(32459056-32459093)
chr3 (1-42)||(41281848-41281889)
chr3 (5-42)||(53191236-53191273)
chr3 (1-45)||(2205537-2205581)
chr3 (6-42)||(26012688-26012724)
chr3 (5-45)||(32458779-32458819)
chr3 (5-45)||(33252758-33252798)
chr3 (5-45)||(53422089-53422129)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 8360991 - 8361195
Alignment:
Q  3 cacaacttttggaaagatagggatctaaaaatgcaattaaacc-atatattactaatggggtactgtcagaatattgaaacggcctcttagatgagagta 101  Q
    ||||||||||  ||||||||||| | |||| | |||||||||  |||||||||||||| |||| ||||||||||||||||| || | | ||||||||| |    
T  8360991 cacaacttttaaaaagatagggacc-aaaagtacaattaaacttatatattactaatgaggtattgtcagaatattgaaaccgcgtgtgagatgagagga 8361089  T
Q  102 gggtggaaaaaataacagccttatctttgcctccaattcttcaatccaagccatatggacgacactttcaaatccacacaaacaatcatattttacacac 201  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8361090 gggtggaaaaaataacagccttatctttgcctacagctcttcaatccaagccatatggacgacactttcaaatccacacaaacaatcatattttacacac 8361189  T
Q  202 catgat 207  Q
    ||||||    
T  8361190 catgat 8361195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30894385 - 30894426
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  30894385 accacaacttttgaaaagatagggatccaaaaatgcaattaa 30894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 35678132 - 35678092
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  35678132 caacttttggaaagataggggtccaaaaatgcaattaaacc 35678092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40297939 - 40297979
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  40297939 caacttttggaaagatagggatccaaaagtgcaattaaacc 40297979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 34082139 - 34082096
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaaccata 48  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||    
T  34082139 caacttttgaaaagatagggatccaaaagtgcaattaaaccata 34082096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12049163 - 12049122
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  12049163 accacaacttttggaaagataggggtccaaaagtgcaattaa 12049122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 12049390 - 12049427
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  12049390 caacttttggaaagataggggtccaaaaatgcaattaa 12049427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16329848 - 16329889
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||| ||||||||||||| |||| |||||||||    
T  16329848 accacaacttttgaaaagatagggatccaaaagtgcaattaa 16329889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 27264378 - 27264419
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  27264378 caacttttggaaagataggggtccaaaagtgcaattaaacca 27264419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28620083 - 28620042
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  28620083 accacaacttttggaaagataggggtccaaaagtgcaattaa 28620042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 41032459 - 41032496
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  41032459 caacttttggaaagatagggatccaaaagtgcaattaa 41032496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 5891753 - 5891793
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  5891753 caacttttggaaagataggggtccaaaagtgcaattaaacc 5891793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 23502401 - 23502449
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaaccatatatta 53  Q
    |||||||||||||||||||| || |||| ||||||||| ||| ||||||    
T  23502401 caacttttggaaagataggggtccaaaagtgcaattaagccaaatatta 23502449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 25566815 - 25566855
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  25566815 caacttttggaaagataggggtccaaaagtgcaattaaacc 25566855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 28251651 - 28251691
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  28251651 caacttttggaaagataggggtccaaaagtgcaattaaacc 28251691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29183173 - 29183133
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  29183173 caacttttggaaagataggggtccaaaagtgcaattaaacc 29183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 38466009 - 38465969
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  38466009 caacttttagaaagataggggtccaaaaatgcaattaaacc 38465969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8979 - 9020
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  8979 accacaacttttggaaagataggggtccaaaaatgcaattaa 9020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 803 - 766
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| |||||||||||||||||    
T  803 caacttttggaaagataggggtctaaaaatgcaattaa 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 5577573 - 5577614
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  5577573 caacttttggaaagatagggatccaaaaatacaattaaacca 5577614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 6655551 - 6655588
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  6655551 caacttttggaaagatagggatccaaaaatgcaattaa 6655588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 6735953 - 6735990
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  6735953 caacttttggaaagatagggatccaaaaatgcaattaa 6735990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4147053 - 4147097
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||||||| || |||| ||||||||||||    
T  4147053 accacaacttttggaaagataggggtccaaaagtgcaattaaacc 4147097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 35409753 - 35409713
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  35409753 caacttttggaaagatagggatccaaaagtgcaattaaacc 35409713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 29233582 - 29233543
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaac 44  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  29233582 caacttttggaaagatagggatccaaaagtgcaattaaac 29233543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2321786 - 2321827
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  2321786 accacaacttttggaaagataggggtccaaaagtgcaattaa 2321827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 4132794 - 4132757
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  4132794 caacttttggaaagatagggatccaaaagtgcaattaa 4132757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6641636 - 6641599
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  6641636 caacttttggaaagataggggtccaaaaatgcaattaa 6641599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7013389 - 7013352
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7013389 caacttttgaaaagatagggatctaaaagtgcaattaa 7013352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 14024313 - 14024350
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  14024313 caacttttggaaagataggggtccaaaaatgcaattaa 14024350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28596199 - 28596240
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||| |||||||||||||| |||| |||||||||    
T  28596199 accacaacttttagaaagatagggatccaaaagtgcaattaa 28596240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36226684 - 36226725
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  36226684 accacaacttttggaaagataggggtccaaaagtgcaattaa 36226725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1985842 - 1985882
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  1985842 caacttttggaaagataggggtccaaaagtgcaattaaacc 1985882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 227997 - 227956
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  227997 caacttttggaaagataggggtccaaaaatgcaattaaacca 227956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 10356157 - 10356120
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10356157 caacttttggaaagatagagatctaaaaatgcaattaa 10356120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38445448 - 38445403
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||| |||||||||||||| |||| |||||||||||||    
T  38445448 accacaactttttgaaagatagggatccaaaagtgcaattaaacca 38445403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 11275227 - 11275187
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  11275227 caacttttggaaagataggggtccaaaaatgcaattaaacc 11275187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 18798283 - 18798323
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  18798283 caacttttggaaagatagggatccaaaagtgcaattaaacc 18798323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 49081606 - 49081646
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  49081606 caacttttgaaaagatagggatctaaaagtgcaattaaacc 49081646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 18073856 - 18073814
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaaccat 47  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||    
T  18073856 caacttttggaaagataggggtctaaaagtgcaattaagccat 18073814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 23358966 - 23359008
Alignment:
Q  4 acaacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    ||||||||| ||||||||||| || ||||||||||||||||||    
T  23358966 acaacttttagaaagataggggtccaaaaatgcaattaaacca 23359008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 37996284 - 37996326
Alignment:
Q  5 caacttttggaaagataggg-atctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  37996284 caacttttggaaagataggggatccaaaaatgcaattaaacca 37996326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 4061261 - 4061298
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  4061261 caacttttggaaagataggggtccaaaaatgcaattaa 4061298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 7195496 - 7195447
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc-atatatta 53  Q
    ||||||||| |||||||||| || ||||||||||||||||| ||||||||    
T  7195496 caacttttgaaaagataggggtccaaaaatgcaattaaacctatatatta 7195447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 9629289 - 9629326
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  9629289 caacttttggaaagataggggtccaaaaatgcaattaa 9629326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10350850 - 10350809
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||| |||||||||| || ||||||||||||||    
T  10350850 accacaacttttgaaaagataggggtccaaaaatgcaattaa 10350809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 18295892 - 18295851
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  18295892 caacttttggaaagataggggtccaaaagtgcaattaaacca 18295851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 30140960 - 30140923
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  30140960 caacttttggaaagataggggtccaaaaatgcaattaa 30140923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 30699063 - 30699026
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  30699063 caacttttggaaagatagggatccaaaagtgcaattaa 30699026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34533258 - 34533217
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  34533258 accacaacttttggaaagataggggtccaaaagtgcaattaa 34533217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44214703 - 44214662
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  44214703 accacaacttttggaaagataggggtccaaaagtgcaattaa 44214662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 36376335 - 36376375
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  36376335 caacttttggaaagataggggtccaaaagtgcaattaaacc 36376375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 38974452 - 38974408
Alignment:
Q  3 cacaacttttggaaagatagggatctaaaaatgcaattaaaccat 47  Q
    ||||||||||| ||||||||||  | |||||||||||||||||||    
T  38974452 cacaacttttgaaaagatagggggccaaaaatgcaattaaaccat 38974408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 48871361 - 48871401
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  48871361 caacttttggaaagataggggtccaaaagtgcaattaaacc 48871401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1380997 - 1381042
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||    
T  1380997 accacaacttttgaaaagatagggagccaaaaatgcaattaaacca 1381042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 1374838 - 1374798
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  1374838 caacttttggaaagataggggtctaaaagtgcaattaaacc 1374798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 34981655 - 34981693
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaa 43  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  34981655 caacttttgaaaagataggggtctaaaaatgcaattaaa 34981693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 21568198 - 21568235
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  21568198 caacttttgaaaagatagggatccaaaaatgcaattaa 21568235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 31784524 - 31784561
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  31784524 caacttttgaaaagatagggatccaaaaatgcaattaa 31784561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 41072101 - 41072138
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  41072101 caacttttggaaagataggggtccaaaaatgcaattaa 41072138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 315058 - 315018
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  315058 caacttttggaaagataggggtccaaaagtgcaattaaacc 315018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 17799102 - 17799142
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  17799102 caacttttggaaagataggggtccaaaagtgcaattaaacc 17799142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 19026090 - 19026130
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||||||||||||||||  |||| ||||||||||||    
T  19026090 caacttttggaaagatagggattcaaaagtgcaattaaacc 19026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 22136932 - 22136896
Alignment:
Q  6 aacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  22136932 aacttttggaaagataggggtctaaaagtgcaattaa 22136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 24365143 - 24365183
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  24365143 caacttttggaaagatagaggtccaaaaatgcaattaaacc 24365183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 35699125 - 35699165
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  35699125 caacttttggaaagataggggtccaaaagtgcaattaaacc 35699165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 42445412 - 42445372
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  42445412 caacttttggaaagataggggtccaaaagtgcaattaaacc 42445372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 139215 - 139175
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  139215 caacttttggaaagatagggatccaaaagtgcaattaaacc 139175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 139447 - 139489
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaaccat 47  Q
    |||||||||||||||||||| || |||| ||||||||||||||    
T  139447 caacttttggaaagataggggtccaaaagtgcaattaaaccat 139489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 7324695 - 7324655
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  7324695 caacttttgaaaagatagggatccaaaaatgcaattaaacc 7324655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 14997049 - 14997012
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  14997049 caacttttggaaagataggggtccaaaaatgcaattaa 14997012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23585247 - 23585288
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  23585247 accacaacttttggaaagataggggtccaaaagtgcaattaa 23585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27223578 - 27223619
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  27223578 accacaacttttggaaagataggggtccaaaagtgcaattaa 27223619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 30239477 - 30239514
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  30239477 caacttttggaaagataggggtctaaaagtgcaattaa 30239514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9067492 - 9067452
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||| |||||||||||| |||| ||||||||||||    
T  9067492 caacttttgggaagatagggatcaaaaagtgcaattaaacc 9067452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10977931 - 10977971
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| |||||||||| || |||||||||||||||||    
T  10977931 caacttttgaaaagataggggtccaaaaatgcaattaaacc 10977971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 13042681 - 13042725
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaaccatat 49  Q
    |||||||||||||||||||| || |||| ||||||||| ||||||    
T  13042681 caacttttggaaagataggggtccaaaagtgcaattaagccatat 13042725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 15150001 - 15150041
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| |||||||||| ||||||| ||||||||||||    
T  15150001 caacttttgaaaagataggggtctaaaagtgcaattaaacc 15150041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 17965879 - 17965839
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  17965879 caacttttgaaaagatagggatccaaaagtgcaattaaacc 17965839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19869427 - 19869471
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||||||| || |||| ||||||||||||    
T  19869427 accacaacttttggaaagataggggtccaaaagtgcaattaaacc 19869471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31250518 - 31250478
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  31250518 caacttttggaaagataggggtccaaaaatgcaattaaacc 31250478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 31209491 - 31209530
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaac 44  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  31209491 caacttttggaaagataggggtccaaaaatgcaattaaac 31209530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7666467 - 7666508
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  7666467 accacaacttttggaaagataggggtccaaaagtgcaattaa 7666508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 7705862 - 7705899
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  7705862 caacttttggaaagatagggatccaaaagtgcaattaa 7705899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 13607957 - 13607920
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  13607957 caacttttggaaagataggggtccaaaaatgcaattaa 13607920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 20472589 - 20472548
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  20472589 caacttttggaaagataggggtccaaaagtgcaattaaacca 20472548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 20473984 - 20474021
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  20473984 caacttttggaaagataggggtctaaaagtgcaattaa 20474021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 22160101 - 22160138
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  22160101 caacttttggaaagataggggtctaaaagtgcaattaa 22160138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 26675093 - 26675056
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  26675093 caacttttggaaagataggggtccaaaaatgcaattaa 26675056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29548449 - 29548490
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  29548449 accacaacttttggaaagataggggtccaaaagtgcaattaa 29548490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43821967 - 43822008
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  43821967 accacaacttttggaaagataggggtccaaaagtgcaattaa 43822008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48277960 - 48277919
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||| |||||||||| || ||||||||||||||    
T  48277960 accacaacttttgaaaagataggggtccaaaaatgcaattaa 48277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52045985 - 52046026
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  52045985 accacaacttttggaaagataggggtccaaaagtgcaattaa 52046026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 52114407 - 52114444
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  52114407 caacttttggaaagatagggatccaaaagtgcaattaa 52114444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 17554085 - 17554045
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  17554085 caacttttggaaagataggggtccaaaagtgcaattaaacc 17554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23770040 - 23770080
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  23770040 caacttttggaaagataggggtccaaaagtgcaattaaacc 23770080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 28158936 - 28158896
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  28158936 caacttttgaaaagatagggatccaaaagtgcaattaaacc 28158896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 28291927 - 28291967
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  28291927 caacttttggaaagatagggggctaaaagtgcaattaaacc 28291967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30998457 - 30998497
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  30998457 caacttttggaaagataggggtccaaaagtgcaattaaacc 30998497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 34158507 - 34158471
Alignment:
Q  9 ttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||| || |||||||||||||||||    
T  34158507 ttttggaaagataggggtccaaaaatgcaattaaacc 34158471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 34158746 - 34158786
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  34158746 caacttttgaaaagatagggatccaaaagtgcaattaaacc 34158786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 34957630 - 34957670
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  34957630 caacttttggaaagataggggtccaaaagtgcaattaaacc 34957670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6809338 - 6809389
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaaaccatatatta 53  Q
    ||||||||||||| |||||||||| || ||||||||||||||| |||||||||    
T  6809338 accacaacttttgaaaagataggggtccaaaaatgcaattaaa-catatatta 6809389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 20359271 - 20359311
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  20359271 caacttttggaaagataggggtccaaaaatgcaattaaacc 20359311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 20551699 - 20551659
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  20551699 caacttttggaaagataggggtccaaaaatgcaattaaacc 20551659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 5225623 - 5225665
Alignment:
Q  3 cacaacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||    
T  5225623 cacaactttaggaaagatagggatccaaaagtgcaattaaacc 5225665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 8029230 - 8029267
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  8029230 caacttttggaaagatagggatccaaaagtgcaattaa 8029267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21727656 - 21727615
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  21727656 accacaacttttggaaagataggggtccaaaagtgcaattaa 21727615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32038108 - 32038149
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||| |||||||||||||| |||| |||||||||    
T  32038108 accacaacttttagaaagatagggatccaaaagtgcaattaa 32038149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 33811698 - 33811735
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  33811698 caacttttggaaagataggggtccaaaaatgcaattaa 33811735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 33871168 - 33871205
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  33871168 caacttttggaaagataggggtccaaaaatgcaattaa 33871205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 39427686 - 39427723
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  39427686 caacttttggaaagataggggtccaaaaatgcaattaa 39427723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 43677143 - 43677106
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  43677143 caacttttggaaagatagggatccaaaagtgcaattaa 43677106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 52143205 - 52143164
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  52143205 caacttttggaaagataggggtccaaaagtgcaattaaacca 52143164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 52363452 - 52363489
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  52363452 caacttttggaaagataggggtcaaaaaatgcaattaa 52363489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 11204772 - 11204812
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  11204772 caacttttggaaagataggggtccaaaagtgcaattaaacc 11204812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 22071203 - 22071163
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| |||||||||| || |||||||||||||||||    
T  22071203 caacttttgaaaagataggggtccaaaaatgcaattaaacc 22071163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32558252 - 32558212
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  32558252 caacttttggaaagataggggtccaaaagtgcaattaaacc 32558212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36230592 - 36230552
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  36230592 caacttttggaaagataggggtccaaaagtgcaattaaacc 36230552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 49227160 - 49227120
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    ||||||||| |||||||||| || |||||||||||||||||    
T  49227160 caacttttgaaaagataggggtccaaaaatgcaattaaacc 49227120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 3745 - 3704
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacca 46  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  3745 caacttttggaaagataggggtccaaaagtgcaattaaacca 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0864 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2688 - 2647
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  2688 accacaacttttggaaagataggggtccaaaagtgcaattaa 2647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 10668 - 10631
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  10668 caacttttggaaagataggggtctaaaagtgcaattaa 10631  T

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Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 15958 - 15921
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  15958 caacttttggaaagataggggtctaaaagtgcaattaa 15921  T

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Target: scaffold0328 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 16027 - 16072
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaaccatata 50  Q
    |||||||||||||||||||| || |||| ||||||||| |||||||    
T  16027 caacttttggaaagataggggtccaaaagtgcaattaagccatata 16072  T

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Target: scaffold0272 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 21122 - 21159
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  21122 caacttttggaaagataggggtccaaaaatgcaattaa 21159  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 79034 - 78993
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  79034 accacaacttttggaaagataggggtccaaaagtgcaattaa 78993  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 257705 - 257746
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  257705 accacaacttttggaaagataggggtccaaaagtgcaattaa 257746  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 7858235 - 7858272
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  7858235 caacttttggaaagatagggatccaaaagtgcaattaa 7858272  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21841771 - 21841730
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  21841771 accacaacttttggaaagataggggtccaaaagtgcaattaa 21841730  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 22202757 - 22202798
Alignment:
Q  6 aacttttggaaagatagggatctaaaaatgcaattaaaccat 47  Q
    |||||||| ||||||||||||| |||| ||||||||||||||    
T  22202757 aacttttgaaaagatagggatccaaaagtgcaattaaaccat 22202798  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28964423 - 28964464
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  28964423 accacaacttttggaaagataggggtccaaaagtgcaattaa 28964464  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 32459056 - 32459093
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  32459056 caacttttggaaagatagagatccaaaaatgcaattaa 32459093  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41281889 - 41281848
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  41281889 accacaacttttggaaagataggggtccaaaagtgcaattaa 41281848  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 53191236 - 53191273
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||||||||||||||| || ||||||||||||||    
T  53191236 caacttttggaaagataggggtccaaaaatgcaattaa 53191273  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2205581 - 2205537
Alignment:
Q  1 accacaacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||||||| |  |||| ||||||||||||    
T  2205581 accacaacttttggaaagataggggttcaaaagtgcaattaaacc 2205537  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26012724 - 26012688
Alignment:
Q  6 aacttttggaaagatagggatctaaaaatgcaattaa 42  Q
    |||||||| |||||||||||||||||| |||||||||    
T  26012724 aacttttgaaaagatagggatctaaaagtgcaattaa 26012688  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32458819 - 32458779
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  32458819 caacttttggaaagataggagtccaaaaatgcaattaaacc 32458779  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33252758 - 33252798
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  33252758 caacttttggaaagataggggtccaaaagtgcaattaaacc 33252798  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 53422129 - 53422089
Alignment:
Q  5 caacttttggaaagatagggatctaaaaatgcaattaaacc 45  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  53422129 caacttttggaaagataggggtccaaaagtgcaattaaacc 53422089  T

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