View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10555_high_11 (Length: 250)

Name: NF10555_high_11
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10555_high_11
NF10555_high_11
[»] chr6 (4 HSPs)
chr6 (11-228)||(10285933-10286150)
chr6 (131-232)||(20210250-20210351)
chr6 (131-232)||(22104273-22104374)
chr6 (129-232)||(14781979-14782083)
[»] chr1 (3 HSPs)
chr1 (124-228)||(24308277-24308381)
chr1 (124-232)||(34505207-34505315)
chr1 (124-228)||(6135017-6135122)
[»] chr8 (2 HSPs)
chr8 (136-188)||(21313778-21313830)
chr8 (135-230)||(19712716-19712811)
[»] chr2 (4 HSPs)
chr2 (129-229)||(34468154-34468254)
chr2 (136-188)||(39994657-39994709)
chr2 (137-228)||(18556064-18556155)
chr2 (135-188)||(11123651-11123704)
[»] chr3 (1 HSPs)
chr3 (136-232)||(21477737-21477833)
[»] chr4 (1 HSPs)
chr4 (135-230)||(28709149-28709244)
[»] scaffold0423 (1 HSPs)
scaffold0423 (136-188)||(10056-10108)
[»] chr5 (1 HSPs)
chr5 (136-188)||(17945915-17945967)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 10285933 - 10286150
Alignment:
Q  11 cagagacaatgactagaaggagaagatccagtttaattttcatcacatagaccaattcgaatgatcaaccgcaatctccaattccttaacacctaaaata 110  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10285933 cagagacaatgactagaaggagatgatccaatttaattttcatcacatagaccaattcgaatgatcaaccgcaatctccaattccttaacacctaaaata 10286032  T
Q  111 atgacaagttattggtgtctggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatat 210  Q
    |||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  10286033 atgacaagctataggtgtctggtctttgtaacagattctgggtgattcatcatattagcacaccttgtgcggggtgaatttatccttctttgagcaatat 10286132  T
Q  211 atttcattctgatttgtt 228  Q
    ||||||||||||||||||    
T  10286133 atttcattctgatttgtt 10286150  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 20210250 - 20210351
Alignment:
Q  131 ggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgttca 230  Q
    ||||||||||||| |||||||||| |||| ||  |||||||| ||||| ||| ||||| || ||||  |||||  ||||||||  ||| |||||||||||    
T  20210250 ggtctttgtaacaaattttggatgcttcaccactttagcacatcttgtgcggggtgaagttctcctattttgagtaatatattctattttgatttgttca 20210349  T
Q  231 aa 232  Q
    ||    
T  20210350 aa 20210351  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 22104273 - 22104374
Alignment:
Q  131 ggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgttca 230  Q
    ||||||||||||| |||||||||| |||| ||  |||||||| ||||| ||| ||||| || ||||  |||||  ||||||||  ||| |||||||||||    
T  22104273 ggtctttgtaacaaattttggatgcttcaccactttagcacatcttgtgcggggtgaagttctcctattttgagtaatatattctattttgatttgttca 22104372  T
Q  231 aa 232  Q
    ||    
T  22104373 aa 22104374  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 14782083 - 14781979
Alignment:
Q  129 ctggtctttgtaacagattttggatgattcatca-tattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgt 227  Q
    |||| |||||||||||| ||||| ||||||| || | ||||||||||||||  || |||||  | ||||  ||||| ||||||||| |||| ||||||||    
T  14782083 ctggactttgtaacagactttgggtgattcaccacttttagcacaccttgtgtggggtgaatctctcctcttttgagcaatatattccattttgatttgt 14781984  T
Q  228 tcaaa 232  Q
    |||||    
T  14781983 tcaaa 14781979  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 24308381 - 24308277
Alignment:
Q  124 ggtgtctggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgat 223  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||| ||| ||||| |||||||||||||| |||||||||||||| ||||    
T  24308381 ggtgtctggtctttgtaacagattttgggtgattcaccattttagtacaccttgtgcggggtgaatttatccttctttgagcaatatatttcattttgat 24308282  T
Q  224 ttgtt 228  Q
    |||||    
T  24308281 ttgtt 24308277  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 34505207 - 34505315
Alignment:
Q  124 ggtgtctggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgat 223  Q
    |||||||| | ||||||| |||| || | ||||||| ||| |||||||||||| | ||| ||||| ||||| |||||||| |||| |||| |||| ||||    
T  34505207 ggtgtctgatttttgtaatagatattaggtgattcaccattttagcacaccttatgcggggtgaatttatctttctttgagcaatgtattccattttgat 34505306  T
Q  224 ttgttcaaa 232  Q
     ||||||||    
T  34505307 gtgttcaaa 34505315  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 6135122 - 6135017
Alignment:
Q  124 ggtgtctggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatcct-tctttgaacaatatatttcattctga 222  Q
    ||||| |||||||||||||| ||||||| ||||| | ||  |||||||| ||| | ||| ||| | ||||| | ||||||| |||||||||||||| |||    
T  6135122 ggtgtgtggtctttgtaacaaattttgggtgatttaccaatttagcacatcttatgcggggtggatttatcttatctttgagcaatatatttcattttga 6135023  T
Q  223 tttgtt 228  Q
    ||||||    
T  6135022 tttgtt 6135017  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 21313778 - 21313830
Alignment:
Q  136 ttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaa 188  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||| |||||    
T  21313778 ttgtaacagattctagatgattcatcattttagcacaccttgtacggggtgaa 21313830  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 19712716 - 19712811
Alignment:
Q  135 tttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgttca 230  Q
    |||||| |||| ||||||||||||||||  |||||||| ||||| ||| ||||||   ||||| |||||  |||||||| |||| |||||||||||    
T  19712716 tttgtatcagactttggatgattcatcacgttagcacatcttgtgcggggtgaaccattccttttttgagtaatatattccattttgatttgttca 19712811  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 34468254 - 34468154
Alignment:
Q  129 ctggtctttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgtt 228  Q
    ||||||||||||||| |||||||||| |||| ||  |||||||| ||||| | | ||||| || ||||  ||||| |||| ||||||||| |||||||||    
T  34468254 ctggtctttgtaacaaattttggatgcttcaccactttagcacatcttgtgcagggtgaagttctcctcttttgagcaatttatttcattttgatttgtt 34468155  T
Q  229 c 229  Q
    |    
T  34468154 c 34468154  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 39994657 - 39994709
Alignment:
Q  136 ttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaa 188  Q
    ||||||||||| || || |||||||||| |||||||||||||||||| |||||    
T  39994657 ttgtaacagatattagaggattcatcattttagcacaccttgtacggggtgaa 39994709  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 18556155 - 18556064
Alignment:
Q  137 tgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgtt 228  Q
    |||||||||||||||||| |||| ||  |||||||| ||||| ||| ||||| || | ||  ||||| ||||||||| |||||| |||||||    
T  18556155 tgtaacagattttggatgcttcaccactttagcacatcttgtgcggggtgaaattcttctcttttgagcaatatattccattctaatttgtt 18556064  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 11123651 - 11123704
Alignment:
Q  135 tttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaa 188  Q
    |||||||||||  |||| ||||||||||| |||||||||||||| ||| |||||    
T  11123651 tttgtaacagacgttgggtgattcatcattttagcacaccttgtgcggggtgaa 11123704  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 21477833 - 21477737
Alignment:
Q  136 ttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgttcaaa 232  Q
    ||||||||||| || || |||||||||| |||||||||||||| ||| |||||    ||  |||||||  |||||||| |||| |||||||||||||    
T  21477833 ttgtaacagatattagaggattcatcattttagcacaccttgtgcggggtgaatcactctgtctttgagtaatatattccattttgatttgttcaaa 21477737  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 28709149 - 28709244
Alignment:
Q  135 tttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaacttatccttctttgaacaatatatttcattctgatttgttca 230  Q
    |||||| ||||| |||||||||||||||  |||||||| ||||| ||| |||||    ||||  |||||  ||||||||||||| |||||||||||    
T  28709149 tttgtatcagatattggatgattcatcacgttagcacatcttgtgcggggtgaatcattcctcttttgagtaatatatttcattttgatttgttca 28709244  T

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Target: scaffold0423 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 10108 - 10056
Alignment:
Q  136 ttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaa 188  Q
    ||||||||| || | ||||||||||||| |||||||||||||| ||| |||||    
T  10108 ttgtaacagtttctagatgattcatcattttagcacaccttgtgcggggtgaa 10056  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 17945967 - 17945915
Alignment:
Q  136 ttgtaacagattttggatgattcatcatattagcacaccttgtacggagtgaa 188  Q
    ||||||||||| || || |||||||||| |||||||||||||| ||| |||||    
T  17945967 ttgtaacagatattagaggattcatcattttagcacaccttgtgcggggtgaa 17945915  T

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