View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10555_high_14 (Length: 227)

Name: NF10555_high_14
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10555_high_14
NF10555_high_14
[»] chr2 (2 HSPs)
chr2 (26-93)||(10255354-10255421)
chr2 (170-227)||(10255220-10255277)
[»] chr6 (1 HSPs)
chr6 (170-224)||(19412031-19412085)
[»] chr7 (1 HSPs)
chr7 (185-224)||(7467371-7467410)
[»] chr4 (1 HSPs)
chr4 (186-224)||(31023077-31023115)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 10255421 - 10255354
Alignment:
Q  26 gagggtgtggatgagatctgaagtgagagttccacgagtgtgttttcagaaagagaaatgtgtttgag 93  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255421 gagggtgaggatgagatctgaagtgagagttccacgagtgtgttttcagaaagagaaatgtgtttgag 10255354  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 10255277 - 10255220
Alignment:
Q  170 tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagta 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255277 tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagta 10255220  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 19412031 - 19412085
Alignment:
Q  170 tcagtcaaattggtattaattattatgatatttactaccattacatttcctagca 224  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||| ||||    
T  19412031 tcagtcaaattgtagttaattattatgatatttactaccattacatttccgagca 19412085  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 7467410 - 7467371
Alignment:
Q  185 ttaattattatgatatttactaccattacatttcctagca 224  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  7467410 ttaattataatgatatttactaccattacatttcctagca 7467371  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 31023077 - 31023115
Alignment:
Q  186 taattattatgatatttactaccattacatttcctagca 224  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  31023077 taattattataatatttactaccattacatttcttagca 31023115  T

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